Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47224 * 269.99544 * 3 2 1 5 5 H 1.48503 * 109.47550 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47462 * 150.00049 * 3 2 1 7 7 C 1.37881 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99567 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47199 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99963 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00256 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47230 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47172 * 179.97438 * 15 14 12 17 17 C 1.38606 * 120.42134 * 99.97767 * 16 15 14 18 18 C 1.38667 * 118.43634 * 180.02562 * 17 16 15 19 19 C 1.38187 * 119.19469 * 0.02562 * 18 17 16 20 20 N 1.31884 * 120.77685 * 359.97438 * 19 18 17 21 21 C 1.31969 * 121.70563 * 0.02562 * 20 19 18 22 22 Cl 1.73607 * 119.63069 * 179.97438 * 21 20 19 23 23 H 0.97002 * 120.00093 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47700 * 59.99263 * 9 7 2 25 25 H 1.09007 * 109.46891 * 299.99330 * 9 7 2 26 26 H 1.09002 * 109.47097 * 59.99867 * 10 9 7 27 27 H 1.08994 * 109.47237 * 299.99906 * 10 9 7 28 28 H 0.96997 * 119.99737 * 0.02562 * 11 10 9 29 29 H 1.09002 * 109.46808 * 59.99931 * 14 12 11 30 30 H 1.08999 * 109.46606 * 300.00129 * 14 12 11 31 31 H 1.09002 * 109.47087 * 60.00340 * 15 14 12 32 32 H 1.08994 * 109.47559 * 300.00189 * 15 14 12 33 33 H 1.08007 * 120.78524 * 0.05026 * 17 16 15 34 34 H 1.08004 * 120.40720 * 180.02562 * 18 17 16 35 35 H 1.08000 * 119.61217 * 180.25801 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.3996 -6.0979 0.0003 14 6 1.4333 -7.4031 0.0008 15 6 2.4276 -8.5660 -0.0004 16 6 1.6742 -9.8711 0.0003 17 6 1.5014 -10.5824 -1.1767 18 6 0.8009 -11.7781 -1.1289 19 6 0.3010 -12.2185 0.0818 20 7 0.4839 -11.5162 1.1830 21 6 1.1452 -10.3742 1.1755 22 17 1.3536 -9.4933 2.6569 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.5429 -4.9308 0.0011 29 1 0.8064 -7.4607 -0.8890 30 1 0.8070 -7.4609 0.8910 31 1 3.0549 -8.5086 0.8892 32 1 3.0536 -8.5079 -0.8907 33 1 1.9032 -10.2141 -2.1092 34 1 0.6479 -12.3583 -2.0269 35 1 -0.2420 -13.1510 0.1276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832023046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -32.772204 kcal Electronic energy + Delta-G solvation = -18519.564429 eV Core-core repulsion = 15349.519085 eV Total energy + Delta-G solvation = -3170.045343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69853 -39.24694 -36.87982 -35.17742 -34.57628 -32.85823 -32.35195 -30.57038 -29.31254 -25.76735 -24.25436 -23.98638 -22.05129 -20.93118 -19.95415 -17.74899 -17.18985 -16.95616 -16.33123 -15.43586 -15.42208 -15.21699 -14.69678 -14.46069 -14.18178 -13.86742 -13.57123 -13.13077 -12.71613 -12.41937 -12.25673 -12.09092 -11.99808 -11.43044 -11.21735 -11.11328 -11.02963 -10.65076 -10.33870 -10.20183 -9.95604 -9.81789 -9.48825 -9.27106 -9.09955 -8.55391 -8.36372 -6.10451 -4.13351 0.53257 0.77258 1.57908 2.99141 3.23013 3.28652 3.34847 3.38858 3.65824 4.09983 4.33633 4.40228 4.48011 4.54061 4.78792 4.87915 4.98667 5.10456 5.26639 5.31653 5.48710 5.53555 5.64226 5.94129 5.95269 6.12151 6.33396 6.33989 6.72878 6.91079 7.33977 7.50510 7.60506 7.87676 8.00268 8.26631 8.63772 8.92763 9.51588 11.01151 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036021 B = 0.002723 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.133802 B =10281.161116 C =10457.728958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.506 3.494 13 O -0.552 6.552 14 C -0.138 4.138 15 C -0.065 4.065 16 C -0.111 4.111 17 C -0.061 4.061 18 C -0.168 4.168 19 C 0.109 3.891 20 N -0.477 5.477 21 C 0.173 3.827 22 Cl -0.024 7.024 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.398 0.602 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -24.534 -1.913 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.292 3.708 13 O -0.430 6.430 14 C -0.178 4.178 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.187 4.187 19 C -0.048 4.048 20 N -0.188 5.188 21 C 0.009 3.991 22 Cl 0.005 6.995 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.231 0.769 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.524 -24.612 -0.975 24.637 hybrid contribution 0.114 1.272 -0.642 1.429 sum -0.410 -23.340 -1.617 23.399 Atomic orbital electron populations 1.69950 1.06100 1.26892 1.50369 1.24998 0.94892 0.99422 0.94979 0.86514 0.79854 0.82999 0.78201 1.20552 1.21151 1.19720 1.21055 0.93248 0.90409 1.51361 0.92253 1.19324 0.94205 0.91153 0.97830 1.21720 0.96047 0.81585 1.00761 1.46348 1.10567 1.06625 1.73687 1.20455 0.88221 0.85502 0.76629 1.90676 1.13989 1.87868 1.50498 1.21648 0.99172 0.92324 1.04655 1.20353 0.96549 0.87826 1.05603 1.20692 0.99767 0.98765 0.92217 1.21603 0.95601 0.93601 0.97864 1.22257 0.99190 0.97371 0.99924 1.22686 0.96635 0.98537 0.86946 1.67036 1.14200 1.05635 1.31920 1.21632 0.97212 0.92151 0.88074 1.98431 1.95151 1.72366 1.33546 0.92830 0.95978 0.95932 0.92575 0.92584 0.76865 0.88925 0.88853 0.89031 0.89310 0.83578 0.83930 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -12.31 5.56 -60.29 -0.33 -12.65 16 12 C 0.51 8.15 7.83 -10.98 -0.09 8.07 16 13 O -0.55 -10.86 15.98 5.55 0.09 -10.77 16 14 C -0.14 -1.57 5.64 -27.88 -0.16 -1.73 16 15 C -0.07 -0.70 4.10 -27.88 -0.11 -0.82 16 16 C -0.11 -1.08 5.16 -104.44 -0.54 -1.62 16 17 C -0.06 -0.45 9.82 -39.29 -0.39 -0.84 16 18 C -0.17 -1.05 10.11 -39.44 -0.40 -1.45 16 19 C 0.11 0.83 11.18 -17.55 -0.20 0.64 16 20 N -0.48 -5.19 10.34 -10.36 -0.11 -5.30 16 21 C 0.17 1.92 7.27 -17.45 -0.13 1.80 16 22 Cl -0.02 -0.27 26.80 -51.86 -1.39 -1.66 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.01 7.27 -51.93 -0.38 0.63 16 31 H 0.09 1.11 7.32 -51.93 -0.38 0.73 16 32 H 0.09 0.93 7.99 -51.93 -0.41 0.52 16 33 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 35 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -32.77 321.20 -8.21 -40.98 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.44 Total: 0.07 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.58 Total: -6.49 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.29 Total: -43.31 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.39 Total: -1.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.77 -8.21 -40.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.211 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds