Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47078 * 60.00337 * 4 2 1 6 6 C 1.38245 * 119.98772 * 269.72950 * 5 4 2 7 7 C 1.38213 * 120.01544 * 179.72697 * 6 5 4 8 8 C 1.38355 * 119.98212 * 0.54323 * 7 6 5 9 9 Cl 1.73605 * 120.01247 * 179.70586 * 8 7 6 10 10 C 1.38349 * 119.97833 * 359.72778 * 8 7 6 11 11 C 1.38218 * 119.98439 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 13 13 O 1.21210 * 119.99902 * 120.00012 * 12 2 1 14 14 O 1.34314 * 120.00021 * 300.00050 * 12 2 1 15 15 C 1.34922 * 116.99819 * 180.02562 * 14 12 2 16 16 H 1.07994 * 120.00082 * 359.97438 * 15 14 12 17 17 C 1.38758 * 119.99650 * 179.97438 * 15 14 12 18 18 N 1.31441 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99624 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46999 * 90.00468 * 19 17 15 21 21 H 1.48503 * 109.47091 * 210.00034 * 19 17 15 22 22 H 1.48498 * 109.47433 * 330.00234 * 19 17 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 4 2 1 31 31 H 1.08000 * 119.99023 * 359.97438 * 6 5 4 32 32 H 1.07994 * 120.01079 * 180.26646 * 7 6 5 33 33 H 1.07997 * 120.00715 * 179.97438 * 10 8 7 34 34 H 1.07994 * 119.99272 * 179.97438 * 11 10 8 35 35 H 0.96999 * 119.99388 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 6 0.3325 -0.3801 -3.0471 7 6 -0.1314 0.2748 -4.1723 8 6 0.6162 1.2927 -4.7374 9 17 0.0378 2.1107 -6.1552 10 6 1.8250 1.6581 -4.1723 11 6 2.2849 1.0065 -3.0435 12 6 2.0323 -0.7104 1.2305 13 8 2.7292 -1.6959 1.1193 14 8 1.7078 -0.2516 2.4504 15 6 2.1906 -0.9335 3.5097 16 1 2.8076 -1.8061 3.3545 17 6 1.8943 -0.5136 4.7986 18 7 1.1430 0.5482 4.9875 19 14 2.5622 -1.4582 6.2653 20 1 3.8826 -0.9006 6.6536 21 1 1.6183 -1.3349 7.4050 22 1 2.7167 -2.8901 5.9033 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.1301 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 -0.2487 -1.1779 -2.6087 32 1 -1.0751 -0.0109 -4.6130 33 1 2.4091 2.4523 -4.6132 34 1 3.2287 1.2914 -2.6026 35 1 0.9362 0.8419 5.8885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838417599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -80.644191 kcal Electronic energy + Delta-G solvation = -19628.088156 eV Core-core repulsion = 16423.674177 eV Total energy + Delta-G solvation = -3204.413980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06957 -38.96756 -36.83656 -35.87254 -34.67198 -32.14755 -31.23000 -31.02444 -26.97812 -26.53721 -25.52526 -22.86199 -22.82587 -21.26232 -18.76737 -17.67632 -17.02453 -16.32776 -15.65328 -15.24411 -15.10587 -14.65663 -14.38155 -13.80669 -13.65926 -13.44866 -13.27160 -13.10871 -12.82530 -11.87419 -11.84707 -11.70627 -11.63649 -11.51757 -11.23503 -11.18221 -10.97792 -10.87685 -10.64707 -10.61269 -10.43246 -10.32529 -9.76171 -9.10684 -8.89021 -8.57862 -8.56772 -6.40450 -4.07977 1.04622 1.19558 2.00341 3.11138 3.18799 3.24603 3.50796 3.54685 3.94417 4.45503 4.66867 4.77541 5.00247 5.08209 5.14344 5.19722 5.26080 5.38229 5.46984 5.59420 5.77876 5.92623 6.00102 6.03164 6.11824 6.16478 6.16883 6.23349 6.32201 6.53007 6.56427 6.68141 6.73655 6.93076 7.40669 7.96490 8.72405 9.08807 9.88222 10.77500 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.047964 B = 0.003333 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.633410 B = 8398.346208 C = 8501.335474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C -0.141 4.141 4 C -0.063 4.063 5 C -0.059 4.059 6 C -0.102 4.102 7 C -0.110 4.110 8 C -0.043 4.043 9 Cl -0.081 7.081 10 C -0.110 4.110 11 C -0.102 4.102 12 C 0.407 3.593 13 O -0.558 6.558 14 O -0.209 6.209 15 C -0.383 4.383 16 H 0.094 0.906 17 C 0.043 3.957 18 N -0.865 5.865 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 2.901 -17.204 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.100 4.100 5 C -0.060 4.060 6 C -0.120 4.120 7 C -0.129 4.129 8 C -0.069 4.069 9 Cl -0.052 7.052 10 C -0.129 4.129 11 C -0.120 4.120 12 C 0.253 3.747 13 O -0.455 6.455 14 O -0.115 6.115 15 C -0.459 4.459 16 H 0.112 0.888 17 C -0.161 4.161 18 N -0.502 5.502 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.032 2.854 -17.150 17.504 hybrid contribution 0.255 -0.342 0.626 0.758 sum -1.778 2.512 -16.524 16.808 Atomic orbital electron populations 1.21911 0.92702 1.02296 1.02911 1.20113 0.97188 0.96115 0.90430 1.21912 1.01069 0.93931 1.02915 1.20525 1.01682 0.98716 0.89059 1.20050 0.94274 0.95559 0.96072 1.21109 0.95851 1.00037 0.95031 1.21018 0.99985 0.95410 0.96479 1.20893 0.96587 0.97854 0.91605 1.98358 1.88789 1.78587 1.39511 1.21019 0.94805 1.00645 0.96428 1.21109 1.00382 0.95542 0.94993 1.23000 0.81351 0.84433 0.85915 1.90543 1.39549 1.27920 1.87536 1.83871 1.63415 1.51615 1.12646 1.21216 1.31673 1.10999 0.82027 0.88834 1.25305 0.96379 0.96540 0.97902 1.69990 1.34729 1.22921 1.22548 0.85714 0.78539 0.79637 0.79557 1.19921 1.20350 1.19139 0.91937 0.92539 0.90855 0.90855 0.92539 0.91928 0.89968 0.89972 0.84908 0.85143 0.85144 0.84906 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.83 37.16 0.29 -1.98 16 2 C -0.04 -0.66 0.74 -155.66 -0.11 -0.77 16 3 C -0.14 -2.28 7.81 37.16 0.29 -1.99 16 4 C -0.06 -0.94 3.75 -27.88 -0.10 -1.05 16 5 C -0.06 -0.73 4.00 -104.62 -0.42 -1.15 16 6 C -0.10 -1.15 7.90 -39.59 -0.31 -1.46 16 7 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 8 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 9 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 10 C -0.11 -1.16 9.83 -39.55 -0.39 -1.54 16 11 C -0.10 -1.15 7.88 -39.59 -0.31 -1.46 16 12 C 0.41 9.82 6.50 36.01 0.23 10.05 16 13 O -0.56 -14.72 15.22 -19.05 -0.29 -15.01 16 14 O -0.21 -5.87 9.55 -20.72 -0.20 -6.06 16 15 C -0.38 -11.25 9.65 30.92 0.30 -10.95 16 16 H 0.09 2.78 6.86 -52.49 -0.36 2.42 16 17 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 18 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 19 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H 0.06 0.84 6.19 -51.93 -0.32 0.52 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 26 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 29 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 30 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 31 H 0.13 1.35 8.04 -52.49 -0.42 0.92 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.35 8.02 -52.49 -0.42 0.92 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -31.90 314.09 -7.14 -39.04 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.35 Total: 1.21 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.27 Total: -13.46 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.76 Total: -24.35 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.49 Total: -21.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.90 -7.14 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838417599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.604 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds