Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46973 * 239.99342 * 3 2 1 5 5 H 1.48492 * 109.47670 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47148 * 120.00015 * 3 2 1 7 7 C 1.38814 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99898 * 197.35264 * 7 2 1 9 9 N 1.36937 * 119.99872 * 17.35524 * 7 2 1 10 10 C 1.46926 * 120.63097 * 207.67520 * 9 7 2 11 11 C 1.53188 * 108.77254 * 233.63099 * 10 9 7 12 12 C 1.53043 * 109.31612 * 305.36213 * 11 10 9 13 13 O 1.42905 * 109.46007 * 181.38720 * 12 11 10 14 14 C 1.35698 * 116.99512 * 149.97132 * 13 12 11 15 15 C 1.38909 * 119.66430 * 179.97438 * 14 13 12 16 16 C 1.38379 * 119.12215 * 180.02562 * 15 14 13 17 17 C 1.38924 * 118.47506 * 359.97438 * 16 15 14 18 18 Cl 1.73594 * 120.36711 * 180.02562 * 17 16 15 19 19 C 1.38153 * 119.26248 * 359.97438 * 17 16 15 20 20 N 1.31966 * 120.81654 * 0.02874 * 19 17 16 21 21 C 1.53036 * 109.52465 * 61.37668 * 12 11 10 22 22 C 1.46931 * 120.63054 * 27.69610 * 9 7 2 23 23 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.58262 * 113.84399 * 10 9 7 25 25 H 1.08996 * 109.70032 * 353.48886 * 10 9 7 26 26 H 1.09001 * 109.49495 * 185.41408 * 11 10 9 27 27 H 1.08999 * 109.53048 * 65.33806 * 11 10 9 28 28 H 1.09001 * 109.45889 * 301.35909 * 12 11 10 29 29 H 1.08002 * 120.44245 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.76279 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.58875 * 179.97438 * 19 17 16 32 32 H 1.09001 * 109.50014 * 58.57650 * 21 12 11 33 33 H 1.09002 * 109.49901 * 178.67613 * 21 12 11 34 34 H 1.09000 * 109.58818 * 246.15506 * 22 9 7 35 35 H 1.08996 * 109.58704 * 6.58573 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3724 -2.3612 -0.3527 10 6 1.8195 -3.6547 0.1819 11 6 2.0751 -4.6099 -0.9881 12 6 0.8197 -4.6902 -1.8596 13 8 1.0438 -5.6054 -2.9341 14 6 -0.0371 -6.2743 -3.4089 15 6 0.1174 -7.1773 -4.4532 16 6 -0.9926 -7.8529 -4.9290 17 6 -2.2249 -7.6002 -4.3396 18 17 -3.6493 -8.4208 -4.8974 19 6 -2.3040 -6.6894 -3.3038 20 7 -1.2267 -6.0610 -2.8724 21 6 0.5019 -3.3051 -2.4276 22 6 0.2280 -2.3351 -1.2739 23 1 -0.4850 0.8400 -0.0004 24 1 1.0470 -4.0689 0.8298 25 1 2.7394 -3.5190 0.7507 26 1 2.3145 -5.6010 -0.6028 27 1 2.9092 -4.2403 -1.5846 28 1 -0.0195 -5.0367 -1.2565 29 1 1.0908 -7.3497 -4.8879 30 1 -0.9027 -8.5610 -5.7395 31 1 -3.2594 -6.4886 -2.8420 32 1 1.3508 -2.9473 -3.0103 33 1 -0.3786 -3.3674 -3.0671 34 1 -0.6742 -2.6418 -0.7447 35 1 0.0986 -1.3269 -1.6673 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839201129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = 11.019835 kcal Electronic energy + Delta-G solvation = -19666.982486 eV Core-core repulsion = 16498.836108 eV Total energy + Delta-G solvation = -3168.146378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73775 -38.54541 -36.82688 -36.26327 -32.81894 -32.62440 -30.61938 -30.06090 -29.39077 -25.33392 -24.00771 -23.28076 -22.19901 -21.70532 -19.29155 -18.37189 -17.23904 -16.71558 -16.56489 -15.40906 -14.91716 -14.78957 -14.27098 -13.83082 -13.58787 -13.50517 -13.36255 -13.02981 -12.66794 -12.34619 -12.27020 -11.55375 -11.45948 -11.41947 -11.13254 -10.75499 -10.72536 -10.33574 -10.26519 -10.10048 -9.94278 -9.69337 -9.61038 -9.53678 -8.51293 -8.36698 -6.72765 -5.80903 -3.23408 0.88875 0.98147 1.88915 3.16650 3.38436 3.44126 3.45435 3.54304 4.17236 4.48375 4.54194 4.74682 4.87085 5.29671 5.37583 5.44342 5.46159 5.53214 5.55330 5.73820 5.81432 5.97896 6.07764 6.22965 6.38859 6.54359 6.57321 6.61550 6.71422 6.91221 7.33040 7.40065 7.62845 7.72240 7.77781 8.42351 9.18367 9.81470 10.37790 11.27947 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034550 B = 0.003525 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.227652 B = 7941.279028 C = 8359.068256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.150 3.850 11 C -0.129 4.129 12 C 0.096 3.904 13 O -0.302 6.302 14 C 0.341 3.659 15 C -0.189 4.189 16 C -0.032 4.032 17 C -0.141 4.141 18 Cl -0.064 7.064 19 C 0.162 3.838 20 N -0.520 5.520 21 C -0.152 4.152 22 C 0.176 3.824 23 H 0.255 0.745 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 -16.271 -9.339 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.023 3.977 11 C -0.169 4.169 12 C 0.041 3.959 13 O -0.208 6.208 14 C 0.162 3.838 15 C -0.210 4.210 16 C -0.058 4.058 17 C -0.171 4.171 18 Cl -0.036 7.036 19 C 0.004 3.996 20 N -0.244 5.244 21 C -0.191 4.191 22 C 0.050 3.950 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.337 -15.558 -8.735 18.152 hybrid contribution 0.165 0.260 -0.695 0.760 sum -3.172 -15.298 -9.430 18.249 Atomic orbital electron populations 1.70022 1.05274 1.25722 1.53579 1.25050 0.95296 0.98475 1.00728 0.86354 0.78916 0.83242 0.78154 1.21002 1.21605 1.20837 1.19151 0.92765 0.84814 1.41835 0.91569 1.44117 1.35858 1.01478 1.50073 1.20858 0.98201 0.86552 0.92108 1.22253 0.96456 0.99997 0.98169 1.22605 0.99714 0.87848 0.85763 1.86335 1.29307 1.53691 1.51484 1.20056 0.85962 0.88493 0.89325 1.21097 1.00749 0.99921 0.99195 1.21271 0.89840 0.96947 0.97708 1.21781 0.89447 1.03186 1.02651 1.98359 1.38327 1.77922 1.88943 1.22463 0.96886 0.89162 0.91069 1.67579 0.98663 1.27270 1.30907 1.22659 1.00669 0.94879 1.00926 1.20754 0.88719 0.98106 0.87427 0.93503 0.96115 0.91926 0.92406 0.91338 0.89724 0.83360 0.83466 0.81645 0.92112 0.92867 0.95960 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -7.01 9.59 -15.06 -0.14 -7.16 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 10 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 11 C -0.13 -2.32 5.73 -26.61 -0.15 -2.47 16 12 C 0.10 1.75 2.34 -26.69 -0.06 1.69 16 13 O -0.30 -5.06 9.76 -18.80 -0.18 -5.24 16 14 C 0.34 5.08 7.45 -17.13 -0.13 4.95 16 15 C -0.19 -2.17 10.04 -39.28 -0.39 -2.56 16 16 C -0.03 -0.31 9.97 -39.28 -0.39 -0.70 16 17 C -0.14 -1.51 6.34 -39.36 -0.25 -1.76 16 18 Cl -0.06 -0.60 28.99 -51.86 -1.50 -2.10 16 19 C 0.16 1.97 10.98 -17.53 -0.19 1.78 16 20 N -0.52 -7.88 8.64 -13.30 -0.11 -7.99 16 21 C -0.15 -3.08 5.70 -26.61 -0.15 -3.23 16 22 C 0.18 4.26 5.31 -3.70 -0.02 4.24 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.25 7.94 -51.93 -0.41 0.84 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.61 6.98 -51.93 -0.36 1.24 16 29 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -29.61 307.53 -8.53 -38.14 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.44 Total: -0.99 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.00 Total: -2.13 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.01 Total: -48.89 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.18 Total: -5.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.61 -8.53 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839201129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.158 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds