Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86794 * 120.00214 * 2 1 4 4 H 1.48494 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47190 * 300.00368 * 3 2 1 6 6 H 1.48507 * 109.47080 * 60.00172 * 3 2 1 7 7 C 1.38755 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99886 * 179.97438 * 7 2 1 9 9 O 1.34915 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.34317 * 117.00324 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99865 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00002 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.46793 * 300.00030 * 12 10 9 14 14 C 1.52996 * 109.46656 * 179.97438 * 12 10 9 15 15 C 1.53001 * 109.46867 * 172.82534 * 14 12 10 16 16 H 1.09002 * 110.27794 * 58.92133 * 15 14 12 17 17 C 1.54947 * 110.31120 * 181.12132 * 15 14 12 18 18 C 1.55307 * 100.94458 * 155.35820 * 17 15 14 19 19 C 1.54377 * 102.25096 * 325.86796 * 18 17 15 20 20 O 1.43240 * 107.59287 * 21.35258 * 19 18 17 21 21 C 1.52994 * 109.47085 * 60.00184 * 12 10 9 22 22 F 1.39895 * 109.46962 * 186.38422 * 21 12 10 23 23 F 1.39906 * 109.47018 * 306.38097 * 21 12 10 24 24 F 1.39895 * 109.47481 * 66.37757 * 21 12 10 25 25 H 0.96998 * 119.99345 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46998 * 292.82084 * 14 12 10 27 27 H 1.08997 * 109.47689 * 52.82528 * 14 12 10 28 28 H 1.08999 * 111.12490 * 273.27821 * 17 15 14 29 29 H 1.09005 * 111.12316 * 37.43753 * 17 15 14 30 30 H 1.09000 * 110.85027 * 207.67682 * 18 17 15 31 31 H 1.08999 * 110.84746 * 84.05664 * 18 17 15 32 32 H 1.09006 * 109.82746 * 261.84154 * 19 18 17 33 33 H 1.09004 * 109.83418 * 140.86899 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7084 1.3463 -0.0006 5 1 1.8897 2.3964 -1.2124 6 1 1.8898 2.3964 1.2126 7 6 2.0081 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0016 10 6 2.0650 -3.4966 -0.0015 11 8 3.2755 -3.4332 -0.0010 12 6 1.3808 -4.8393 -0.0021 13 1 0.7577 -4.9299 0.8876 14 6 2.4345 -5.9486 -0.0025 15 6 1.7481 -7.3041 0.1771 16 1 1.0300 -7.4732 -0.6254 17 6 2.8011 -8.4404 0.2077 18 6 2.0363 -9.5296 1.0081 19 6 1.2056 -8.6857 1.9985 20 8 1.0926 -7.3657 1.4539 21 6 0.5072 -4.9660 -1.2517 22 9 -0.2389 -6.1473 -1.1812 23 9 -0.3599 -3.8707 -1.3275 24 9 1.3214 -4.9957 -2.3889 25 1 -0.4849 0.8401 0.0004 26 1 2.9737 -5.9371 -0.9497 27 1 3.1350 -5.7847 0.8163 28 1 3.0363 -8.7852 -0.7992 29 1 3.7026 -8.1264 0.7340 30 1 2.7310 -10.1797 1.5400 31 1 1.3865 -10.1087 0.3519 32 1 1.7104 -8.6454 2.9638 33 1 0.2142 -9.1232 2.1163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845314642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = -284.010624 kcal Electronic energy + Delta-G solvation = -23604.976350 eV Core-core repulsion = 19409.177835 eV Total energy + Delta-G solvation = -4195.798515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.71592 -47.26498 -47.01850 -39.65931 -38.99951 -35.62716 -33.80274 -32.23853 -32.16454 -29.55355 -25.76703 -25.26999 -23.35553 -21.80888 -21.16046 -19.93495 -18.34134 -17.99300 -17.85203 -17.41345 -16.77753 -16.24422 -15.71052 -14.79814 -14.60692 -14.44223 -14.24710 -14.05676 -13.92133 -13.79908 -13.55308 -13.18612 -13.14885 -13.07210 -12.63804 -12.48622 -11.92107 -11.77050 -11.65765 -11.42116 -11.22696 -10.98324 -10.94420 -10.73758 -10.46542 -10.41274 -9.86803 -9.44449 -9.19805 -8.62401 -6.44976 -4.13201 2.78855 3.14862 3.17369 3.25089 3.51055 3.69847 3.73740 4.17601 4.27999 4.36091 4.38808 4.60863 4.76280 4.84041 5.06551 5.11259 5.17208 5.20182 5.36299 5.50700 5.58049 5.61979 5.67905 5.74982 5.91953 6.09550 6.26066 6.57712 7.01301 7.34195 7.87445 8.57511 9.01834 9.72951 10.71606 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.005075 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.414683 B = 5516.455654 C = 5858.398796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.384 4.384 8 H 0.099 0.901 9 O -0.195 6.195 10 C 0.392 3.608 11 O -0.539 6.539 12 C -0.114 4.114 13 H 0.142 0.858 14 C -0.101 4.101 15 C 0.062 3.938 16 H 0.090 0.910 17 C -0.150 4.150 18 C -0.156 4.156 19 C 0.051 3.949 20 O -0.375 6.375 21 C 0.459 3.541 22 F -0.182 7.182 23 F -0.157 7.157 24 F -0.182 7.182 25 H 0.271 0.729 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -16.108 0.373 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.117 0.883 9 O -0.101 6.101 10 C 0.237 3.763 11 O -0.437 6.437 12 C -0.135 4.135 13 H 0.160 0.840 14 C -0.139 4.139 15 C 0.005 3.995 16 H 0.107 0.893 17 C -0.188 4.188 18 C -0.193 4.193 19 C -0.026 4.026 20 O -0.295 6.295 21 C 0.405 3.595 22 F -0.164 7.164 23 F -0.138 7.138 24 F -0.164 7.164 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.478 -15.740 0.439 15.815 hybrid contribution 0.259 0.523 -0.224 0.626 sum 1.737 -15.216 0.215 15.317 Atomic orbital electron populations 1.70027 1.06033 1.27798 1.45049 1.25393 0.95845 0.98952 0.95904 0.85590 0.79479 0.79841 0.78197 1.18850 1.20063 1.20064 1.21344 0.92496 0.79543 1.52586 0.88347 1.83914 1.38999 1.13141 1.74039 1.22151 0.86621 0.86283 0.81235 1.90573 1.14857 1.87444 1.50802 1.22085 0.98822 0.95001 0.97544 0.84046 1.21644 0.96540 0.89936 1.05767 1.23454 0.93834 0.94697 0.87526 0.89286 1.23288 0.98915 0.94977 1.01588 1.23112 0.99311 0.98404 0.98496 1.23088 0.99589 0.83067 0.96822 1.88444 1.77217 1.29683 1.34128 1.20237 0.79852 0.73959 0.85478 1.93082 1.78413 1.48341 1.96536 1.93346 1.70656 1.53259 1.96516 1.93162 1.72748 1.96199 1.54264 0.91927 0.88721 0.88168 0.89739 0.89962 0.90127 0.90568 0.91430 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.04 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.25 5.49 -17.53 -0.10 1.16 16 3 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.34 9.65 30.92 0.30 -11.05 16 8 H 0.10 2.91 6.86 -52.48 -0.36 2.55 16 9 O -0.20 -5.61 8.50 -20.70 -0.18 -5.79 16 10 C 0.39 9.71 7.04 36.01 0.25 9.97 16 11 O -0.54 -14.19 15.11 -19.06 -0.29 -14.47 16 12 C -0.11 -2.19 2.35 -91.78 -0.22 -2.40 16 13 H 0.14 2.59 7.62 -51.93 -0.40 2.19 16 14 C -0.10 -1.60 3.74 -26.73 -0.10 -1.70 16 15 C 0.06 0.81 3.00 -25.70 -0.08 0.74 16 16 H 0.09 1.18 5.52 -51.93 -0.29 0.89 16 17 C -0.15 -1.49 6.57 -24.48 -0.16 -1.65 16 18 C -0.16 -1.32 7.02 -24.79 -0.17 -1.49 16 19 C 0.05 0.53 7.79 37.88 0.30 0.83 16 20 O -0.38 -5.32 10.43 -35.23 -0.37 -5.69 16 21 C 0.46 8.69 2.67 37.15 0.10 8.79 16 22 F -0.18 -2.98 14.31 2.25 0.03 -2.95 16 23 F -0.16 -3.49 15.91 2.25 0.04 -3.45 16 24 F -0.18 -3.44 16.27 2.25 0.04 -3.41 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.09 1.45 7.43 -51.93 -0.39 1.07 16 27 H 0.10 1.61 7.88 -51.93 -0.41 1.21 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -32.68 292.77 -3.96 -36.64 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.50 Total: -0.38 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.12 Total: 3.18 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.76 Total: -24.28 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.83 Total: -25.94 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 0.10 Total: -9.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.68 -3.96 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845314642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.366 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds