Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50698 * 109.46804 * 239.99888 * 2 1 3 5 5 O 1.20825 * 119.99716 * 239.99750 * 4 2 1 6 6 O 1.34223 * 120.00243 * 60.00250 * 4 2 1 7 7 C 1.45202 * 117.00045 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47065 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.47144 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99909 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99850 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00418 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99823 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46782 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47214 * 119.99657 * 13 11 9 16 16 H 1.48493 * 109.46932 * 240.00046 * 13 11 9 17 17 C 1.50696 * 109.46861 * 119.99921 * 2 1 3 18 18 C 1.38246 * 119.98618 * 240.00049 * 17 2 1 19 19 C 1.38216 * 120.01497 * 180.02562 * 18 17 2 20 20 C 1.38357 * 119.98603 * 359.97165 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38217 * 119.98914 * 359.48757 * 22 20 19 24 24 H 1.09001 * 109.46784 * 60.00408 * 1 2 3 25 25 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46759 * 300.00461 * 1 2 3 27 27 H 1.09006 * 109.47080 * 299.99608 * 7 6 4 28 28 H 1.08997 * 109.47208 * 60.00015 * 7 6 4 29 29 H 1.08997 * 109.47643 * 300.00026 * 8 7 6 30 30 H 1.09001 * 109.47523 * 59.99960 * 8 7 6 31 31 H 0.96996 * 120.00262 * 180.02562 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00776 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07996 * 119.99353 * 180.23044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.2277 -0.9858 -3.5896 8 6 1.7556 -0.3194 -4.8833 9 6 2.2954 -1.0808 -6.0666 10 1 2.9130 -1.9530 -5.9114 11 6 2.0007 -0.6638 -7.3473 12 7 1.2481 0.3981 -7.5365 13 14 2.6692 -1.6080 -8.8140 14 1 3.4816 -2.7553 -8.3355 15 1 1.5391 -2.1099 -9.6365 16 1 3.5187 -0.7091 -9.6359 17 6 2.0323 -0.7104 1.2305 18 6 2.8271 -0.0383 2.1403 19 6 3.2885 -0.6894 3.2688 20 6 2.9544 -2.0140 3.4881 21 17 3.5330 -2.8322 4.9056 22 6 2.1633 -2.6876 2.5745 23 6 1.6986 -2.0340 1.4488 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.3172 -0.9847 -3.5565 28 1 1.8642 -2.0129 -3.5568 29 1 0.6661 -0.3208 -4.9163 30 1 2.1186 0.7078 -4.9164 31 1 1.0405 0.6912 -8.4375 32 1 3.0882 0.9956 1.9688 33 1 3.9097 -0.1643 3.9793 34 1 1.9060 -3.7229 2.7428 35 1 1.0780 -2.5587 0.7375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845337502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = -89.448834 kcal Electronic energy + Delta-G solvation = -18863.862906 eV Core-core repulsion = 15659.067128 eV Total energy + Delta-G solvation = -3204.795778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54769 -39.21248 -36.84051 -36.10158 -34.27944 -33.34226 -31.30268 -30.37147 -29.39360 -25.57107 -24.58249 -23.09402 -22.44900 -20.93540 -20.02231 -17.41860 -17.36656 -16.42846 -16.09543 -15.99657 -15.52442 -15.01285 -14.51905 -14.18432 -13.78834 -13.66878 -13.49539 -13.01095 -12.75740 -12.40386 -12.28775 -12.02693 -11.68007 -11.47817 -11.29791 -11.22779 -11.04664 -11.00288 -10.78353 -10.69055 -10.16383 -9.67987 -9.63934 -9.31173 -9.21260 -8.80512 -8.47306 -6.13132 -4.17482 0.87520 1.10649 1.90091 2.51419 3.03745 3.25770 3.33337 3.38090 3.54142 4.30916 4.36807 4.50971 4.66334 4.88688 4.96827 5.12802 5.15557 5.23649 5.23821 5.47495 5.59724 5.67605 5.73765 5.93435 5.99568 6.05466 6.06134 6.08666 6.31627 6.56014 6.60634 6.95779 7.53032 7.59041 7.83974 8.15008 8.23181 8.88353 9.47225 10.98401 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.002803 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.019538 B = 9985.228577 C =10408.433231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 H 0.116 0.884 4 C 0.458 3.542 5 O -0.510 6.510 6 O -0.354 6.354 7 C 0.075 3.925 8 C 0.025 3.975 9 C -0.526 4.526 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.066 4.066 18 C -0.096 4.096 19 C -0.113 4.113 20 C -0.034 4.034 21 Cl -0.077 7.077 22 C -0.111 4.111 23 C -0.072 4.072 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -0.811 22.855 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 H 0.134 0.866 4 C 0.300 3.700 5 O -0.398 6.398 6 O -0.270 6.270 7 C 0.003 3.997 8 C -0.013 4.013 9 C -0.564 4.564 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.060 4.060 21 Cl -0.048 7.048 22 C -0.130 4.130 23 C -0.090 4.090 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.002 -1.078 22.816 22.842 hybrid contribution 0.574 -0.667 -0.821 1.204 sum 0.573 -1.745 21.995 22.072 Atomic orbital electron populations 1.21801 0.90914 1.03340 1.03839 1.19960 0.98608 1.00310 0.87703 0.86560 1.23304 0.77943 0.83062 0.85705 1.90654 1.35575 1.25981 1.87625 1.86513 1.69308 1.56283 1.14916 1.23653 0.98099 0.95249 0.82710 1.19172 0.97835 0.96830 0.87420 1.21018 1.32348 1.12740 0.90316 0.92225 1.24983 0.94977 0.95098 0.99096 1.69978 1.36905 1.24065 1.21900 0.86422 0.78810 0.79896 0.82238 1.19581 1.20804 1.20813 1.19494 0.97762 0.94482 0.94909 1.20992 0.96721 1.00275 0.93478 1.20970 1.00900 0.92851 0.98490 1.20943 1.00841 0.93685 0.90545 1.98365 1.87842 1.79203 1.39374 1.21017 0.97822 1.00415 0.93699 1.20942 0.98480 0.93705 0.95855 0.90116 0.91882 0.91010 0.92339 0.92334 0.95340 0.95357 0.92742 0.84825 0.84877 0.84894 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.94 37.16 0.33 -1.07 16 2 C -0.05 -0.55 3.01 -92.92 -0.28 -0.83 16 3 H 0.12 1.13 7.88 -51.93 -0.41 0.72 16 4 C 0.46 7.61 7.12 36.00 0.26 7.86 16 5 O -0.51 -9.76 14.86 -18.75 -0.28 -10.03 16 6 O -0.35 -6.80 10.12 -39.24 -0.40 -7.20 16 7 C 0.08 1.65 5.40 37.16 0.20 1.85 16 8 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 9 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 10 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 13 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.07 -0.76 4.40 -104.62 -0.46 -1.22 16 18 C -0.10 -0.95 9.67 -39.59 -0.38 -1.33 16 19 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 20 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 21 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 22 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 23 C -0.07 -0.84 7.93 -39.59 -0.31 -1.15 16 24 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 25 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.13 1.00 7.95 -52.48 -0.42 0.58 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.52 7.52 -52.49 -0.39 1.12 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -31.05 322.16 -8.37 -39.42 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.53 Total: -3.16 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.23 Total: -12.47 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.68 Total: -17.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.05 -8.37 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845337502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.027 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds