Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47458 * 2 1 4 4 C 1.50699 * 109.46908 * 119.99903 * 2 1 3 5 5 H 1.08005 * 120.00245 * 119.99803 * 4 2 1 6 6 C 1.37879 * 120.00149 * 299.99998 * 4 2 1 7 7 N 1.31512 * 119.99669 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47352 * 60.00033 * 8 6 4 10 10 H 1.48499 * 109.47004 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47064 * 300.00038 * 8 6 4 12 12 O 1.45200 * 109.47337 * 240.00004 * 2 1 3 13 13 C 1.34230 * 117.00203 * 90.00098 * 12 2 1 14 14 O 1.20821 * 119.99649 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99869 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46699 * 299.99629 * 15 13 12 17 17 C 1.53000 * 109.47181 * 59.99903 * 15 13 12 18 18 C 1.50696 * 109.46610 * 179.97438 * 15 13 12 19 19 C 1.38247 * 119.98658 * 120.00167 * 18 15 13 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 15 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 300.00056 * 1 2 3 27 27 H 1.09005 * 109.46715 * 59.99680 * 1 2 3 28 28 H 0.97004 * 119.99277 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47107 * 299.99427 * 17 15 13 30 30 H 1.08992 * 109.46984 * 60.00129 * 17 15 13 31 31 H 1.09000 * 109.46754 * 179.97438 * 17 15 13 32 32 H 1.08003 * 119.99321 * 359.97438 * 19 18 15 33 33 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 35 35 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3212 -1.1204 4.0080 9 1 3.8062 -1.1210 4.0083 10 1 1.8258 -0.4206 5.2205 11 1 1.8256 -2.5202 4.0077 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7184 -0.5773 -3.5494 16 1 3.6873 -1.0409 -3.3638 17 6 1.7225 -1.6437 -4.0098 18 6 2.8603 0.4727 -4.6210 19 6 4.0945 0.7094 -5.1973 20 6 4.2252 1.6719 -6.1805 21 6 3.1208 2.3992 -6.5876 22 17 3.2842 3.6078 -7.8229 23 6 1.8873 2.1663 -6.0059 24 6 1.7565 1.1989 -5.0274 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.6194 -2.4032 -3.2349 30 1 0.7537 -1.1800 -4.1953 31 1 2.0848 -2.1071 -4.9274 32 1 4.9566 0.1419 -4.8792 33 1 5.1893 1.8564 -6.6310 34 1 1.0257 2.7368 -6.3200 35 1 0.7926 1.0135 -4.5770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845468079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -83.946508 kcal Electronic energy + Delta-G solvation = -19472.625604 eV Core-core repulsion = 16268.068425 eV Total energy + Delta-G solvation = -3204.557179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22485 -38.92783 -36.68571 -35.73860 -34.04414 -33.21902 -31.14492 -29.77527 -29.10230 -25.34908 -24.86093 -22.97245 -22.62255 -20.90055 -19.34208 -17.27695 -17.00022 -16.62159 -15.73434 -15.56501 -15.00548 -14.85335 -14.42972 -13.95139 -13.58117 -13.51363 -13.07369 -12.79345 -12.38935 -12.23542 -11.86866 -11.74826 -11.56407 -11.33966 -11.15891 -11.08419 -11.04505 -10.88087 -10.83208 -10.41300 -10.30073 -9.61293 -9.53044 -9.05147 -8.94017 -8.64104 -8.50995 -6.20347 -4.27615 1.04568 1.26381 2.02967 2.95427 3.24760 3.27935 3.29856 3.41283 3.82743 4.32093 4.52574 4.68691 4.81172 5.09749 5.13043 5.17499 5.30380 5.39386 5.48411 5.66696 5.83216 5.86086 5.92044 6.09141 6.14814 6.25236 6.50169 6.61000 6.72682 6.85540 6.88820 7.14613 7.57498 7.70333 7.91456 8.11801 8.60917 8.85808 9.37991 10.86987 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.003433 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.953309 B = 8154.263912 C = 8316.808949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.046 0.954 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.354 6.354 13 C 0.455 3.545 14 O -0.513 6.513 15 C -0.050 4.050 16 H 0.113 0.887 17 C -0.139 4.139 18 C -0.061 4.061 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.035 4.035 22 Cl -0.079 7.079 23 C -0.111 4.111 24 C -0.071 4.071 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.015 0.985 28 H 0.267 0.733 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -1.189 -17.683 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.270 6.270 13 C 0.297 3.703 14 O -0.402 6.402 15 C -0.069 4.069 16 H 0.131 0.869 17 C -0.196 4.196 18 C -0.062 4.062 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.062 4.062 22 Cl -0.051 7.051 23 C -0.130 4.130 24 C -0.089 4.089 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.357 -0.607 -17.573 17.901 hybrid contribution 0.253 -0.033 0.843 0.881 sum 3.611 -0.641 -16.730 17.128 Atomic orbital electron populations 1.22156 0.97571 1.00078 1.01372 1.20627 0.91360 0.93900 0.77753 0.93621 1.20993 1.32636 1.13526 0.88926 0.91353 1.24890 0.94908 0.95089 0.99075 1.69891 1.35947 1.22526 1.24305 0.86327 0.79223 0.79537 0.81008 1.19971 1.21025 1.19922 1.86472 1.75708 1.43571 1.21229 1.23090 0.75223 0.85977 0.86014 1.90624 1.48277 1.16758 1.84590 1.19963 1.02496 0.95228 0.89205 0.86940 1.21759 0.98013 0.97670 1.02176 1.19529 0.93714 0.96858 0.96049 1.20988 0.96915 0.97665 0.96049 1.20945 0.97750 0.96304 0.98281 1.20912 0.95654 0.94715 0.94880 1.98356 1.98122 1.55375 1.53218 1.21004 0.96192 0.98750 0.97042 1.20946 0.99176 0.94041 0.94716 0.94423 0.88266 0.96590 0.92324 0.90308 0.92028 0.91363 0.84918 0.84999 0.84990 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.33 37.16 0.35 -3.51 16 2 C 0.22 5.73 2.56 -27.88 -0.07 5.66 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 5 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 O -0.35 -8.15 9.77 -39.26 -0.38 -8.54 16 13 C 0.45 9.12 7.10 36.01 0.26 9.38 16 14 O -0.51 -11.76 14.33 -18.75 -0.27 -12.03 16 15 C -0.05 -0.71 3.01 -92.93 -0.28 -0.98 16 16 H 0.11 1.37 7.88 -51.93 -0.41 0.97 16 17 C -0.14 -1.64 8.94 37.16 0.33 -1.31 16 18 C -0.06 -0.83 4.40 -104.62 -0.46 -1.29 16 19 C -0.10 -1.15 9.67 -39.59 -0.38 -1.53 16 20 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 21 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 22 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.37 16 23 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 24 C -0.07 -0.97 7.93 -39.59 -0.31 -1.28 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.24 7.95 -52.48 -0.42 0.82 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.80 7.51 -52.49 -0.39 1.41 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -30.43 317.05 -8.14 -38.57 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.37 Total: 0.45 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.00 Total: -12.23 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.53 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.65 Total: -20.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.43 -8.14 -38.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.372 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds