Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 107.16727 * 2 1 4 4 O 1.42099 * 113.54505 * 233.80255 * 2 1 3 5 5 N 1.49353 * 107.52554 * 115.33760 * 2 1 3 6 6 C 1.30650 * 120.00170 * 180.02562 * 5 2 1 7 7 C 1.47660 * 120.77574 * 359.71618 * 6 5 2 8 8 C 1.35153 * 119.09230 * 179.80475 * 7 6 5 9 9 C 1.40732 * 120.83496 * 0.45904 * 8 7 6 10 10 N 1.36713 * 119.15308 * 179.74482 * 9 8 7 11 11 C 1.34780 * 120.00073 * 35.06912 * 10 9 8 12 12 O 1.22128 * 119.99560 * 5.29887 * 11 10 9 13 13 C 1.38982 * 120.00199 * 185.29275 * 11 10 9 14 14 H 1.08003 * 120.00094 * 0.02562 * 13 11 10 15 15 C 1.39752 * 120.00136 * 180.02562 * 13 11 10 16 16 N 1.30862 * 119.99908 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00232 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47400 * 89.99725 * 17 15 13 19 19 H 1.48501 * 109.46793 * 210.00101 * 17 15 13 20 20 H 1.48506 * 109.46648 * 329.99690 * 17 15 13 21 21 C 1.40730 * 121.68978 * 359.77204 * 9 8 7 22 22 C 1.35152 * 120.84077 * 359.97438 * 21 9 8 23 23 H 1.08993 * 109.47169 * 64.66295 * 1 2 3 24 24 H 1.09002 * 109.47046 * 184.66474 * 1 2 3 25 25 H 1.09002 * 109.46781 * 304.66123 * 1 2 3 26 26 H 1.09002 * 109.47480 * 53.80151 * 3 2 1 27 27 H 1.08997 * 109.47369 * 173.80572 * 3 2 1 28 28 H 1.09006 * 109.46870 * 293.80171 * 3 2 1 29 29 H 1.08005 * 120.45022 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.58000 * 180.18844 * 8 7 6 31 31 H 0.97001 * 120.00101 * 215.06873 * 10 9 8 32 32 H 0.97001 * 120.00326 * 179.97438 * 16 15 13 33 33 H 1.08003 * 119.57427 * 179.97438 * 21 9 8 34 34 H 1.08003 * 120.45297 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3816 -0.7693 -1.0512 5 7 2.2638 -0.6095 1.2872 6 6 3.5394 -0.7298 1.5425 7 6 4.5512 -0.2747 0.5681 8 6 5.8616 -0.4119 0.8689 9 6 6.2655 -0.9884 2.0876 10 7 7.6003 -1.1152 2.3543 11 6 8.4650 -0.1728 1.9292 12 8 8.0474 0.8410 1.3912 13 6 9.8319 -0.3546 2.1031 14 1 10.2012 -1.2513 2.5785 15 6 10.7285 0.6228 1.6627 16 7 10.2809 1.7095 1.0871 17 14 12.5657 0.3782 1.8958 18 1 13.1269 -0.3171 0.7098 19 1 13.2249 1.6995 2.0531 20 1 12.8055 -0.4424 3.1102 21 6 5.3305 -1.4381 3.0384 22 6 4.0029 -1.3294 2.8098 23 1 -0.3633 0.4397 -0.9287 24 1 -0.3633 -1.0243 0.0836 25 1 -0.3633 0.5845 0.8453 26 1 1.8768 2.2595 0.8293 27 1 3.4328 1.7788 0.1109 28 1 2.0604 2.2027 -0.9403 29 1 4.2481 0.1650 -0.3707 30 1 6.6083 -0.0789 0.1632 31 1 7.9251 -1.8834 2.8495 32 1 10.9032 2.3881 0.7818 33 1 5.6784 -1.8757 3.9625 34 1 3.2909 -1.6770 3.5437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848124867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 24.241596 kcal Electronic energy + Delta-G solvation = -19567.528583 eV Core-core repulsion = 16401.999249 eV Total energy + Delta-G solvation = -3165.529333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.90288 -37.31629 -36.32589 -34.78755 -32.70632 -31.94176 -30.48276 -30.20029 -29.08630 -27.53982 -25.51633 -22.06585 -21.80518 -19.74203 -18.41663 -17.50484 -17.01095 -16.32961 -15.89837 -15.72538 -15.35788 -14.35464 -13.95602 -13.87364 -13.66374 -13.44323 -13.25964 -12.96987 -12.86666 -12.59396 -12.31156 -12.21267 -12.00776 -11.48517 -11.29331 -11.17754 -11.07717 -10.70896 -10.54673 -10.28598 -10.15382 -9.16549 -8.95492 -8.34502 -8.16072 -7.55209 -6.29755 -5.89006 -4.84562 -0.65928 2.03925 2.39436 2.60888 3.08698 3.15941 3.17992 3.19787 3.79695 4.03960 4.30063 4.35800 4.48583 4.73862 4.83400 4.93198 5.05284 5.11055 5.33405 5.60590 5.80518 5.87824 6.09046 6.11394 6.40135 6.93128 6.96561 7.19319 7.27945 7.42075 7.46124 7.90908 8.03348 8.21228 8.54401 8.85800 9.47774 10.45110 10.74210 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.038005 B = 0.003857 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.564418 B = 7258.123783 C = 7721.557992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.536 4.536 2 S 2.247 3.753 3 C -0.670 4.670 4 O -0.927 6.927 5 N -1.043 6.043 6 C 0.162 3.838 7 C -0.223 4.223 8 C -0.081 4.081 9 C 0.152 3.848 10 N -0.695 5.695 11 C 0.542 3.458 12 O -0.574 6.574 13 C -0.535 4.535 14 H 0.068 0.932 15 C 0.087 3.913 16 N -0.743 5.743 17 Si 0.912 3.088 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.145 4.145 22 C -0.112 4.112 23 H 0.131 0.869 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.389 0.611 32 H 0.271 0.729 33 H 0.115 0.885 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 -1.383 -0.888 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.694 4.694 2 S 2.444 3.556 3 C -0.820 4.820 4 O -0.913 6.913 5 N -0.923 5.923 6 C 0.049 3.951 7 C -0.250 4.250 8 C -0.103 4.103 9 C 0.049 3.951 10 N -0.337 5.337 11 C 0.352 3.648 12 O -0.459 6.459 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.136 4.136 16 N -0.371 5.371 17 Si 0.737 3.263 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.168 4.168 22 C -0.139 4.139 23 H 0.149 0.851 24 H 0.159 0.841 25 H 0.159 0.841 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.222 0.778 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.425 -1.079 -1.698 18.535 hybrid contribution 1.311 0.280 0.128 1.347 sum -17.114 -0.800 -1.570 17.205 Atomic orbital electron populations 1.28820 1.16063 1.12876 1.11653 1.16170 0.81184 0.80950 0.77330 1.30518 1.14581 1.27245 1.09676 1.93590 1.72343 1.63772 1.61563 1.69068 1.26638 1.48923 1.47684 1.19537 0.83310 0.98135 0.94154 1.22757 0.94673 1.09574 0.97985 1.20606 0.95169 0.98930 0.95553 1.17996 0.85244 0.99340 0.92551 1.43398 1.04489 1.26450 1.59345 1.16299 0.86518 0.81948 0.80041 1.90747 1.79100 1.28397 1.47621 1.19477 0.91271 1.05948 1.40330 0.91347 1.25736 1.00915 0.94072 0.92857 1.70156 1.35826 1.05479 1.25608 0.86291 0.82050 0.78414 0.79579 1.19527 1.20301 1.18691 1.20486 0.92713 1.05742 0.97828 1.21376 0.94175 1.04728 0.93607 0.85051 0.84150 0.84104 0.85743 0.84534 0.87008 0.86911 0.84865 0.77834 0.91819 0.86715 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -2.18 10.89 101.05 1.10 -1.08 16 2 S 2.25 23.92 4.30 -107.50 -0.46 23.46 16 3 C -0.67 -6.38 10.23 101.05 1.03 -5.35 16 4 O -0.93 -14.65 16.14 -35.23 -0.57 -15.22 16 5 N -1.04 -15.57 10.12 33.68 0.34 -15.23 16 6 C 0.16 3.07 6.66 -80.68 -0.54 2.53 16 7 C -0.22 -4.67 7.60 -36.83 -0.28 -4.95 16 8 C -0.08 -1.95 8.45 -39.74 -0.34 -2.28 16 9 C 0.15 3.52 6.25 -83.81 -0.52 3.00 16 10 N -0.70 -16.74 5.17 -12.93 -0.07 -16.80 16 11 C 0.54 15.62 7.13 -15.98 -0.11 15.51 16 12 O -0.57 -18.51 12.46 4.80 0.06 -18.45 16 13 C -0.54 -14.97 9.16 -38.74 -0.35 -15.33 16 14 H 0.07 1.74 7.84 -52.48 -0.41 1.33 16 15 C 0.09 2.39 5.49 -17.40 -0.10 2.30 16 16 N -0.74 -21.82 11.67 55.53 0.65 -21.17 16 17 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.15 -2.85 9.82 -39.74 -0.39 -3.24 16 22 C -0.11 -2.08 10.30 -36.83 -0.38 -2.46 16 23 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 24 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.12 0.90 8.14 -51.92 -0.42 0.48 16 27 H 0.14 1.80 5.89 -51.93 -0.31 1.49 16 28 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 29 H 0.11 2.15 4.87 -52.48 -0.26 1.90 16 30 H 0.13 3.57 6.41 -52.49 -0.34 3.24 16 31 H 0.39 8.03 8.74 -40.82 -0.36 7.67 16 32 H 0.27 7.16 8.30 -40.82 -0.34 6.83 16 33 H 0.11 1.94 8.06 -52.48 -0.42 1.51 16 34 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -40.28 301.59 -5.16 -45.44 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -3.76 Total: 10.09 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.88 Total: -11.34 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.92 Total: -53.20 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.51 Total: -33.66 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 23.92 SS G_CDS: -0.46 Total: 23.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -40.28 -5.16 -45.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848124867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.682 kcal (2) G-P(sol) polarization free energy of solvation -40.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds