Wall clock time and date at job start Tue Mar 31 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 107.16516 * 2 1 4 4 O 1.42092 * 113.54253 * 233.80723 * 2 1 3 5 5 N 1.49350 * 107.52388 * 115.33940 * 2 1 3 6 6 C 1.30884 * 119.99772 * 64.89923 * 5 2 1 7 7 C 1.47661 * 120.89369 * 359.72066 * 6 5 2 8 8 C 1.36052 * 119.02906 * 179.66650 * 7 6 5 9 9 C 1.38954 * 121.04614 * 0.64366 * 8 7 6 10 10 C 1.39887 * 121.99214 * 359.65251 * 9 8 7 11 11 N 1.39707 * 119.57832 * 180.02562 * 10 9 8 12 12 C 1.34778 * 120.00515 * 144.69922 * 11 10 9 13 13 O 1.22119 * 119.99801 * 4.49594 * 12 11 10 14 14 C 1.39018 * 120.00277 * 184.48986 * 12 11 10 15 15 H 1.07998 * 119.99927 * 5.05149 * 14 12 11 16 16 C 1.39485 * 119.99883 * 185.05076 * 14 12 11 17 17 N 1.31007 * 120.00504 * 354.95426 * 16 14 12 18 18 Si 1.86807 * 119.99838 * 174.95105 * 16 14 12 19 19 H 1.48497 * 109.47125 * 94.99896 * 18 16 14 20 20 H 1.48497 * 109.47195 * 215.00055 * 18 16 14 21 21 H 1.48500 * 109.47069 * 335.00058 * 18 16 14 22 22 C 1.36559 * 120.84587 * 359.97438 * 10 9 8 23 23 H 1.09001 * 109.46911 * 306.19494 * 1 2 3 24 24 H 1.09000 * 109.47436 * 66.20055 * 1 2 3 25 25 H 1.08999 * 109.46964 * 186.19774 * 1 2 3 26 26 H 1.09000 * 109.46794 * 175.33581 * 3 2 1 27 27 H 1.08992 * 109.47263 * 295.34166 * 3 2 1 28 28 H 1.09001 * 109.46903 * 55.34342 * 3 2 1 29 29 H 1.07998 * 120.48505 * 359.97047 * 7 6 5 30 30 H 1.07999 * 119.47170 * 180.28975 * 8 7 6 31 31 H 1.08007 * 119.00306 * 179.66713 * 9 8 7 32 32 H 0.97005 * 119.99684 * 324.69235 * 11 10 9 33 33 H 0.96994 * 120.00748 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.56361 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3494 1.7333 0.0000 4 8 2.3816 -0.7692 -1.0513 5 7 2.2637 -0.6095 1.2872 6 6 2.0022 -1.8663 1.5427 7 6 1.2587 -2.6979 0.5752 8 6 1.0137 -4.0017 0.8766 9 6 1.4396 -4.5514 2.0796 10 6 2.1414 -3.8019 3.0297 11 7 2.5462 -4.4059 4.2226 12 6 3.7168 -4.0563 4.7917 13 8 4.3845 -3.1543 4.3102 14 6 4.1642 -4.7224 5.9270 15 1 3.6160 -5.5725 6.3055 16 6 5.3210 -4.2928 6.5772 17 7 6.0402 -3.3255 6.0639 18 14 5.8447 -5.0966 8.1801 19 1 6.8292 -6.1714 7.8963 20 1 6.4651 -4.0781 9.0650 21 1 4.6561 -5.6791 8.8532 22 6 2.4367 -2.4876 2.8056 23 1 -0.3633 0.6069 0.8294 24 1 -0.3634 0.4147 -0.9403 25 1 -0.3633 -1.0217 0.1109 26 1 3.4353 1.7781 0.0836 27 1 2.0364 2.2102 -0.9287 28 1 1.8983 2.2528 0.8453 29 1 0.9188 -2.2785 -0.3602 30 1 0.4746 -4.6177 0.1721 31 1 1.2225 -5.5889 2.2873 32 1 1.9846 -5.0770 4.6414 33 1 6.8444 -3.0265 6.5162 34 1 2.9791 -1.9133 3.5421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848218565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:55 Heat of formation + Delta-G solvation = 23.971140 kcal Electronic energy + Delta-G solvation = -19620.439417 eV Core-core repulsion = 16454.898356 eV Total energy + Delta-G solvation = -3165.541061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.74384 -37.25244 -36.34820 -34.78432 -32.90758 -32.01425 -30.27519 -29.64882 -28.94613 -27.35478 -26.22574 -22.00634 -21.73597 -19.87655 -18.28597 -17.38591 -16.88118 -16.33616 -15.97377 -15.39218 -15.09767 -14.77127 -14.05875 -13.79805 -13.72085 -13.52089 -13.39259 -13.21723 -12.98579 -12.52178 -12.22470 -11.94599 -11.92770 -11.55445 -11.22904 -11.06617 -10.84097 -10.68772 -10.50619 -10.26209 -10.22520 -9.20695 -9.04922 -8.63954 -7.50362 -6.92965 -6.52903 -6.21885 -4.80913 -0.71066 2.00738 2.46249 2.57028 3.08678 3.12194 3.19398 3.23823 3.77074 4.08131 4.28252 4.40169 4.49542 4.63890 4.73981 4.80877 4.97524 5.15198 5.41097 5.50241 5.64869 5.91172 6.13390 6.18764 6.58623 6.78622 7.14328 7.24098 7.34578 7.35196 7.62176 8.03248 8.09009 8.25801 8.53152 8.92320 9.54306 10.51520 10.80437 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028876 B = 0.004232 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.427398 B = 6614.924800 C = 7319.052818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.255 3.745 3 C -0.532 4.532 4 O -0.928 6.928 5 N -1.038 6.038 6 C 0.236 3.764 7 C -0.304 4.304 8 C -0.050 4.050 9 C -0.233 4.233 10 C 0.222 3.778 11 N -0.706 5.706 12 C 0.544 3.456 13 O -0.567 6.567 14 C -0.536 4.536 15 H 0.068 0.932 16 C 0.088 3.912 17 N -0.744 5.744 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.144 4.144 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.389 0.611 33 H 0.270 0.730 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 9.763 -10.402 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.451 3.549 3 C -0.690 4.690 4 O -0.914 6.914 5 N -0.917 5.917 6 C 0.122 3.878 7 C -0.331 4.331 8 C -0.070 4.070 9 C -0.257 4.257 10 C 0.122 3.878 11 N -0.350 5.350 12 C 0.353 3.647 13 O -0.451 6.451 14 C -0.571 4.571 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.372 5.372 18 Si 0.736 3.264 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.173 4.173 23 H 0.146 0.854 24 H 0.132 0.868 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.222 0.778 33 H 0.081 0.919 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.565 10.529 -10.958 18.508 hybrid contribution -0.709 -0.852 0.631 1.275 sum -11.273 9.677 -10.327 18.094 Atomic orbital electron populations 1.30483 1.28396 1.12595 1.09957 1.15432 0.80809 0.81459 0.77179 1.28818 1.13945 1.14435 1.11818 1.93584 1.73751 1.62235 1.61815 1.69239 1.51795 1.25464 1.45222 1.19817 0.90936 0.84091 0.92932 1.22659 1.13867 0.97421 0.99178 1.19907 0.97759 0.93904 0.95409 1.20875 1.10331 0.99148 0.95348 1.17382 0.92392 0.90815 0.87172 1.44214 1.23786 1.43802 1.23157 1.16330 0.78705 0.84784 0.84841 1.90758 1.56116 1.33332 1.64903 1.19390 1.10334 1.16019 1.11367 0.91390 1.25690 0.95420 0.94035 0.98376 1.70234 1.10902 1.20726 1.35320 0.86290 0.79343 0.79376 0.81386 1.19681 1.20265 1.18689 1.22281 1.06039 0.93860 0.95124 0.85435 0.86807 0.84413 0.83565 0.84835 0.83776 0.87326 0.87479 0.87546 0.77775 0.91887 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.96 10.23 101.05 1.03 -3.93 16 2 S 2.25 24.48 4.30 -107.50 -0.46 24.02 16 3 C -0.53 -2.57 10.89 101.05 1.10 -1.47 16 4 O -0.93 -14.68 16.19 -35.23 -0.57 -15.25 16 5 N -1.04 -17.87 10.14 33.72 0.34 -17.53 16 6 C 0.24 4.94 6.66 -80.74 -0.54 4.40 16 7 C -0.30 -5.69 7.66 -36.52 -0.28 -5.97 16 8 C -0.05 -0.93 9.92 -40.10 -0.40 -1.33 16 9 C -0.23 -4.73 9.91 -38.70 -0.38 -5.12 16 10 C 0.22 5.29 6.25 -84.26 -0.53 4.76 16 11 N -0.71 -17.40 5.30 -13.43 -0.07 -17.47 16 12 C 0.54 16.06 7.30 -15.97 -0.12 15.94 16 13 O -0.57 -18.83 12.22 4.81 0.06 -18.77 16 14 C -0.54 -15.25 9.14 -38.83 -0.35 -15.60 16 15 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 16 C 0.09 2.44 5.48 -17.44 -0.10 2.34 16 17 N -0.74 -22.28 11.69 55.52 0.65 -21.63 16 18 Si 0.91 19.97 29.56 -169.99 -5.02 14.94 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.14 -3.57 8.93 -36.50 -0.33 -3.89 16 23 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.14 1.32 5.85 -51.92 -0.30 1.02 16 26 H 0.15 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.11 1.73 4.87 -52.49 -0.26 1.48 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.92 8.06 -52.48 -0.42 1.49 16 32 H 0.39 8.21 8.76 -40.82 -0.36 7.86 16 33 H 0.27 7.28 8.30 -40.82 -0.34 6.94 16 34 H 0.15 4.26 6.17 -52.49 -0.32 3.93 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -42.29 301.71 -5.16 -47.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.75 Total: 9.57 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.88 Total: -9.86 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.92 Total: -56.64 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.51 Total: -34.02 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 24.48 SS G_CDS: -0.46 Total: 24.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -42.29 -5.16 -47.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848218565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.420 kcal (2) G-P(sol) polarization free energy of solvation -42.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds