Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 119.97138 * 2 1 4 4 C 1.38875 * 119.94004 * 180.02562 * 3 2 1 5 5 N 1.39742 * 120.05773 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99524 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46780 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99707 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99987 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47249 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00092 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00148 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00363 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47055 * 90.00116 * 15 13 11 17 17 H 1.48498 * 109.47295 * 210.00479 * 15 13 11 18 18 H 1.48505 * 109.46457 * 330.00072 * 15 13 11 19 19 C 1.38909 * 119.87881 * 359.97438 * 4 3 2 20 20 C 1.38093 * 119.93658 * 359.97438 * 19 4 3 21 21 C 1.38365 * 119.96836 * 179.97438 * 2 1 3 22 22 Cl 1.73594 * 119.93917 * 359.72244 * 21 2 1 23 23 H 1.08999 * 109.46932 * 270.01743 * 1 2 3 24 24 H 1.08992 * 109.47391 * 30.02073 * 1 2 3 25 25 H 1.09006 * 109.46827 * 150.02029 * 1 2 3 26 26 H 1.08001 * 120.02983 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00321 * 359.97438 * 5 4 3 28 28 H 1.09007 * 109.47127 * 299.99553 * 6 5 4 29 29 H 1.08995 * 109.47486 * 60.00250 * 6 5 4 30 30 H 0.97005 * 120.00300 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.46996 * 300.00201 * 10 9 7 32 32 H 1.09000 * 109.47403 * 59.99903 * 10 9 7 33 33 H 0.96999 * 120.00291 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.03476 * 180.02562 * 19 4 3 35 35 H 1.07996 * 119.96549 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5858 1.1958 -0.0005 5 7 4.2864 2.4049 0.0000 6 6 5.7514 2.4025 -0.0011 7 6 6.2560 3.8226 -0.0009 8 8 5.4694 4.7457 -0.0003 9 7 7.5814 4.0667 -0.0013 10 6 8.0720 5.4471 -0.0016 11 6 9.5791 5.4447 -0.0014 12 1 10.1176 4.5085 -0.0015 13 6 10.2703 6.6376 -0.0022 14 7 9.6146 7.7776 -0.0026 15 14 12.1384 6.6346 -0.0026 16 1 12.6330 6.6332 -1.4027 17 1 12.6355 7.8466 0.6968 18 1 12.6315 5.4216 0.6980 19 6 4.2771 -0.0091 -0.0005 20 6 3.5821 -1.2024 0.0005 21 6 2.1982 -1.1987 0.0005 22 17 1.3278 -2.7006 0.0085 23 1 -0.3633 0.0003 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6570 2.1319 -0.0004 27 1 3.8027 3.2457 0.0004 28 1 6.1146 1.8873 0.8882 29 1 6.1132 1.8889 -0.8918 30 1 8.2106 3.3284 -0.0014 31 1 7.7092 5.9614 -0.8915 32 1 7.7098 5.9617 0.8884 33 1 10.1010 8.6169 -0.0028 34 1 5.3571 -0.0126 -0.0005 35 1 4.1192 -2.1393 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848664007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = -31.516193 kcal Electronic energy + Delta-G solvation = -18435.689997 eV Core-core repulsion = 15265.699119 eV Total energy + Delta-G solvation = -3169.990879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91194 -38.96077 -36.69582 -35.31376 -34.32664 -32.60392 -32.47483 -30.31400 -27.85453 -27.03745 -25.91785 -22.78927 -22.61410 -20.86118 -19.90423 -18.03712 -16.94945 -16.44404 -16.13040 -15.43847 -15.34925 -15.23113 -14.55965 -14.31094 -14.15374 -13.69595 -13.40269 -13.28332 -12.74345 -12.56110 -12.51633 -12.06005 -11.99864 -11.94700 -11.57109 -11.49415 -11.06735 -10.95526 -10.74790 -10.40695 -9.90503 -9.50767 -9.35499 -8.95545 -8.84452 -8.07726 -7.48630 -6.24936 -4.32728 1.18356 1.29206 2.17821 3.08010 3.16750 3.19243 3.26106 3.28249 3.58936 3.97892 4.28848 4.59986 4.66567 5.03921 5.11484 5.11865 5.21530 5.26183 5.33254 5.35039 5.42824 5.51029 5.69947 5.83679 6.06087 6.12472 6.28389 6.52523 7.08110 7.18528 7.23780 7.38488 7.54170 7.66824 7.86401 8.42158 8.62800 8.87426 9.34033 10.85170 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.049036 B = 0.002486 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.868934 B =11260.016726 C =11805.133981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.189 4.189 4 C 0.235 3.765 5 N -0.726 5.726 6 C 0.101 3.899 7 C 0.493 3.507 8 O -0.553 6.553 9 N -0.705 5.705 10 C 0.249 3.751 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.198 4.198 20 C -0.055 4.055 21 C -0.102 4.102 22 Cl -0.086 7.086 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.129 0.871 27 H 0.414 0.586 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.394 0.606 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.130 0.870 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 -18.408 0.022 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.212 4.212 4 C 0.129 3.871 5 N -0.357 5.357 6 C -0.028 4.028 7 C 0.277 3.723 8 O -0.432 6.432 9 N -0.353 5.353 10 C 0.129 3.871 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.221 4.221 20 C -0.074 4.074 21 C -0.131 4.131 22 Cl -0.057 7.057 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.147 0.853 27 H 0.252 0.748 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.227 0.773 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.944 -17.608 0.026 22.460 hybrid contribution 1.237 -0.024 -0.001 1.237 sum -12.707 -17.632 0.025 21.734 Atomic orbital electron populations 1.20878 0.90597 1.03319 1.02843 1.19420 0.96171 0.90817 0.96343 1.20389 0.91829 0.97773 1.11182 1.17872 0.91040 0.86258 0.91925 1.44530 1.04598 1.06155 1.80389 1.21166 0.81997 0.96389 1.03219 1.20312 0.83899 0.90127 0.78001 1.90661 1.55500 1.45726 1.51362 1.46422 1.05137 1.12201 1.71529 1.19170 0.94037 0.75984 0.97931 1.21198 0.90477 0.93148 1.53605 0.91778 1.24958 0.99303 0.95179 0.94558 1.69968 1.36048 0.97560 1.48620 0.86389 0.84319 0.77784 0.78283 1.20399 1.20952 1.19695 1.20597 0.99983 0.90396 1.11151 1.20727 0.91728 0.98301 0.96661 1.20421 0.92076 0.86045 1.14562 1.98318 1.77031 1.32923 1.97456 0.90678 0.91161 0.90845 0.85266 0.74764 0.89406 0.89416 0.77349 0.95340 0.95333 0.92340 0.85178 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 36.01 0.35 -0.65 16 2 C -0.03 -0.27 5.88 -104.62 -0.62 -0.89 16 3 C -0.19 -2.10 9.55 -39.39 -0.38 -2.47 16 4 C 0.24 2.79 6.65 -83.77 -0.56 2.23 16 5 N -0.73 -9.40 5.71 -59.79 -0.34 -9.74 16 6 C 0.10 1.28 5.39 -5.19 -0.03 1.25 16 7 C 0.49 8.90 7.90 -10.98 -0.09 8.82 16 8 O -0.55 -12.20 15.67 5.56 0.09 -12.12 16 9 N -0.70 -13.64 5.55 -61.47 -0.34 -13.99 16 10 C 0.25 6.31 5.43 -5.19 -0.03 6.28 16 11 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 12 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 15 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.20 -2.12 9.31 -39.39 -0.37 -2.49 16 20 C -0.05 -0.56 9.82 -39.57 -0.39 -0.95 16 21 C -0.10 -1.10 6.31 -39.48 -0.25 -1.35 16 22 Cl -0.09 -0.84 27.28 -51.86 -1.41 -2.26 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.07 0.59 6.90 -51.93 -0.36 0.23 16 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.41 5.81 7.45 -40.82 -0.30 5.51 16 28 H 0.09 0.95 7.95 -51.93 -0.41 0.53 16 29 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 30 H 0.39 6.33 8.32 -40.82 -0.34 6.00 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 1.18 6.73 -52.49 -0.35 0.83 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -30.48 318.78 -8.51 -38.99 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.25 Total: 6.92 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.77 Total: -3.18 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.05 Total: -48.45 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.41 Total: -2.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.48 -8.51 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848664007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.472 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds