Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47561 * 2 1 4 4 C 1.52995 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47178 * 305.00359 * 4 3 2 6 6 C 1.50700 * 109.47055 * 64.99904 * 4 3 2 7 7 O 1.21218 * 120.00072 * 119.99948 * 6 4 3 8 8 O 1.34309 * 120.00154 * 300.00100 * 6 4 3 9 9 C 1.34924 * 117.00044 * 179.97438 * 8 6 4 10 10 H 1.07997 * 120.00257 * 359.97438 * 9 8 6 11 11 C 1.38748 * 119.99822 * 179.72786 * 9 8 6 12 12 N 1.31442 * 120.00231 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00017 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47412 * 59.99383 * 13 11 9 15 15 H 1.48499 * 109.47655 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46855 * 299.99367 * 13 11 9 17 17 C 1.50693 * 109.47086 * 184.99754 * 4 3 2 18 18 C 1.38258 * 119.99944 * 299.72521 * 17 4 3 19 19 C 1.38220 * 120.03262 * 179.76353 * 18 17 4 20 20 C 1.38240 * 120.00893 * 0.51510 * 19 18 17 21 21 C 1.38331 * 119.98563 * 359.73892 * 20 19 18 22 22 Cl 1.73603 * 120.01070 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.99125 * 120.00230 * 17 4 3 24 24 H 1.09000 * 109.46767 * 300.00361 * 1 2 3 25 25 H 1.09006 * 109.46916 * 59.99655 * 1 2 3 26 26 H 1.08996 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46767 * 239.99639 * 2 1 3 28 28 H 1.09006 * 109.46916 * 120.00345 * 2 1 3 29 29 H 1.08998 * 109.46854 * 59.99998 * 3 2 1 30 30 H 1.09002 * 109.46816 * 300.00222 * 3 2 1 31 31 H 0.97009 * 119.99891 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.98408 * 359.97438 * 18 17 4 33 33 H 1.07997 * 119.99829 * 180.25227 * 19 18 17 34 34 H 1.07993 * 120.00567 * 179.72039 * 20 19 18 35 35 H 1.08003 * 120.00693 * 359.97438 * 23 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0729 0.8417 -1.2867 7 8 4.7701 1.4979 -2.0301 8 8 3.7485 -0.4208 -1.6105 9 6 4.2309 -0.8973 -2.7770 10 1 4.8476 -0.2695 -3.4030 11 6 3.9390 -2.1956 -3.1698 12 7 3.1928 -2.9615 -2.4053 13 14 4.6075 -2.8556 -4.7844 14 1 6.0917 -2.8133 -4.7600 15 1 4.1557 -4.2578 -4.9711 16 1 4.1068 -2.0204 -5.9057 17 6 4.0724 2.8577 0.1244 18 6 3.7435 3.7946 -0.8377 19 6 4.1999 5.0942 -0.7223 20 6 4.9943 5.4553 0.3498 21 6 5.3280 4.5172 1.3100 22 17 6.3251 4.9702 2.6570 23 6 4.8665 3.2176 1.1967 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.9890 -3.8693 -2.6799 32 1 3.1269 3.5117 -1.6781 33 1 3.9393 5.8265 -1.4720 34 1 5.3545 6.4696 0.4375 35 1 5.1267 2.4847 1.9461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859804845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -81.417187 kcal Electronic energy + Delta-G solvation = -19789.208092 eV Core-core repulsion = 16584.760593 eV Total energy + Delta-G solvation = -3204.447499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93549 -38.60571 -36.51577 -35.41267 -34.95161 -32.12338 -31.97909 -30.61419 -28.58940 -25.53022 -24.33561 -22.61471 -21.99900 -20.90547 -19.42261 -17.72870 -16.82827 -16.69412 -15.48723 -15.38221 -14.82945 -14.55229 -14.38678 -13.76944 -13.71184 -13.35357 -13.28343 -13.01458 -12.49602 -12.06103 -11.73272 -11.60739 -11.53834 -11.33791 -11.25716 -11.10437 -10.87131 -10.74021 -10.49730 -10.32986 -10.27909 -10.04808 -9.59590 -9.03729 -8.72731 -8.56837 -8.49810 -6.41817 -4.09048 1.31413 1.37870 2.16633 3.12073 3.18581 3.21807 3.51123 3.69038 3.99303 4.54885 4.74943 4.92274 5.09069 5.14003 5.28313 5.42577 5.44670 5.54606 5.64462 5.73338 5.85908 5.91782 6.02857 6.08607 6.25609 6.27025 6.31138 6.47113 6.55322 6.64661 6.70928 6.82043 6.93919 7.31948 7.41668 7.95518 8.70444 9.07831 9.84508 10.75514 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.004625 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.117698 B = 6052.537366 C = 6732.572096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C -0.100 4.100 4 C -0.037 4.037 5 H 0.103 0.897 6 C 0.403 3.597 7 O -0.548 6.548 8 O -0.204 6.204 9 C -0.385 4.385 10 H 0.093 0.907 11 C 0.045 3.955 12 N -0.863 5.863 13 Si 0.940 3.060 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.271 1.271 17 C -0.044 4.044 18 C -0.074 4.074 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.038 4.038 22 Cl -0.082 7.082 23 C -0.103 4.103 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.269 0.731 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 11.585 7.298 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.137 4.137 4 C -0.057 4.057 5 H 0.121 0.879 6 C 0.248 3.752 7 O -0.445 6.445 8 O -0.111 6.111 9 C -0.461 4.461 10 H 0.111 0.889 11 C -0.159 4.159 12 N -0.500 5.500 13 Si 0.765 3.235 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.196 1.196 17 C -0.044 4.044 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.064 4.064 22 Cl -0.053 7.053 23 C -0.122 4.122 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.539 11.544 7.222 13.704 hybrid contribution 0.555 -0.327 -0.642 0.909 sum -0.984 11.217 6.580 13.042 Atomic orbital electron populations 1.21693 0.96601 1.01308 1.00494 1.21825 0.95030 0.95486 1.05445 1.21543 0.91278 0.98836 1.02057 1.19880 0.97485 0.91816 0.96496 0.87892 1.22864 0.81610 0.82791 0.87892 1.90580 1.38937 1.62408 1.52585 1.83899 1.62942 1.25448 1.38850 1.21169 1.31967 0.97379 0.95560 0.88910 1.25256 0.96402 0.94958 0.99303 1.69965 1.34855 1.08295 1.36888 0.85801 0.79289 0.77876 0.80564 1.19595 1.20420 1.19568 1.19388 0.96417 0.94603 0.94007 1.21103 0.98348 0.92293 0.97511 1.21055 0.97896 0.96528 0.97489 1.20961 0.99391 0.99026 0.94079 1.20760 0.99005 0.95033 0.91631 1.98346 1.68753 1.92791 1.45419 1.20895 0.97797 0.94591 0.98926 0.93877 0.93271 0.92808 0.87285 0.92301 0.91544 0.91709 0.92081 0.85417 0.85258 0.85374 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.16 0.37 -1.77 16 2 C -0.14 -2.46 5.57 -26.73 -0.15 -2.61 16 3 C -0.10 -1.58 4.42 -26.73 -0.12 -1.70 16 4 C -0.04 -0.67 2.50 -92.93 -0.23 -0.90 16 5 H 0.10 1.71 7.88 -51.93 -0.41 1.30 16 6 C 0.40 9.50 7.04 36.01 0.25 9.76 16 7 O -0.55 -14.24 14.32 -19.06 -0.27 -14.51 16 8 O -0.20 -5.48 6.89 -20.71 -0.14 -5.62 16 9 C -0.38 -10.97 9.64 30.92 0.30 -10.67 16 10 H 0.09 2.70 6.86 -52.49 -0.36 2.34 16 11 C 0.05 1.23 5.49 -17.53 -0.10 1.13 16 12 N -0.86 -24.20 13.67 55.48 0.76 -23.44 16 13 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 C -0.04 -0.72 4.40 -104.63 -0.46 -1.18 16 18 C -0.07 -1.17 7.97 -39.58 -0.32 -1.49 16 19 C -0.11 -1.48 10.05 -39.59 -0.40 -1.87 16 20 C -0.12 -1.48 9.83 -39.55 -0.39 -1.87 16 21 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 22 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 23 C -0.10 -1.54 9.46 -39.55 -0.37 -1.91 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.11 2.43 5.46 -51.93 -0.28 2.15 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.04 7.59 -51.93 -0.39 0.64 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.13 2.07 7.58 -52.49 -0.40 1.67 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.13 1.76 7.95 -52.48 -0.42 1.34 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -30.49 315.75 -7.64 -38.13 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.35 Total: 3.12 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.86 Total: -15.85 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.76 Total: -23.44 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.42 Total: -20.13 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.49 -7.64 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859804845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.290 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds