Wall clock time and date at job start Tue Mar 31 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 120.02609 * 2 1 4 4 C 1.38246 * 120.08512 * 180.27584 * 3 2 1 5 5 C 1.38418 * 120.13689 * 359.74858 * 4 3 2 6 6 Cl 1.73601 * 119.97509 * 180.02562 * 5 4 3 7 7 C 1.38199 * 120.05421 * 359.97438 * 5 4 3 8 8 C 1.38898 * 120.02258 * 179.77048 * 2 1 3 9 9 N 1.39676 * 120.06919 * 0.02562 * 8 2 1 10 10 N 1.40099 * 119.99815 * 179.72176 * 9 8 2 11 11 C 1.34779 * 120.00029 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00366 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.46949 * 59.99452 * 13 11 10 15 15 C 1.53007 * 109.47040 * 300.00135 * 13 11 10 16 16 C 1.50695 * 109.47383 * 180.02562 * 13 11 10 17 17 H 1.08001 * 120.00119 * 35.10169 * 16 13 11 18 18 C 1.37877 * 120.00250 * 215.10626 * 16 13 11 19 19 N 1.31507 * 120.00706 * 184.90733 * 18 16 13 20 20 Si 1.86807 * 119.99617 * 4.90415 * 18 16 13 21 21 H 1.48503 * 109.47044 * 84.82552 * 20 18 16 22 22 H 1.48503 * 109.47110 * 204.82178 * 20 18 16 23 23 H 1.48499 * 109.47347 * 324.82491 * 20 18 16 24 24 H 1.09002 * 109.47112 * 270.22982 * 1 2 3 25 25 H 1.08997 * 109.47372 * 30.22996 * 1 2 3 26 26 H 1.08999 * 109.47051 * 150.23240 * 1 2 3 27 27 H 1.07994 * 119.95415 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.92738 * 179.72574 * 4 3 2 29 29 H 1.07995 * 120.05017 * 180.02562 * 7 5 4 30 30 H 0.96994 * 119.99946 * 359.72385 * 9 8 2 31 31 H 0.96999 * 120.00732 * 0.02562 * 10 9 8 32 32 H 1.08997 * 109.46947 * 175.07453 * 15 13 11 33 33 H 1.08995 * 109.46913 * 55.06930 * 15 13 11 34 34 H 1.08998 * 109.46708 * 295.07144 * 15 13 11 35 35 H 0.96994 * 120.00587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5807 1.1974 -0.0058 5 6 4.2769 0.0010 -0.0063 6 17 6.0128 0.0077 -0.0129 7 6 3.5911 -1.1988 -0.0005 8 6 2.2020 -1.2026 0.0048 9 7 1.5055 -2.4133 0.0091 10 7 2.2080 -3.6255 0.0081 11 6 1.5360 -4.7938 0.0128 12 8 0.3232 -4.7957 0.0174 13 6 2.2916 -6.0977 0.0122 14 1 2.9217 -6.1528 0.8999 15 6 3.1666 -6.1796 -1.2402 16 6 1.3142 -7.2447 0.0174 17 1 0.3796 -7.1603 -0.5173 18 6 1.6128 -8.4019 0.7049 19 7 0.8060 -9.4377 0.6309 20 14 3.1639 -8.4985 1.7416 21 1 2.8954 -7.9324 3.0880 22 1 3.5822 -9.9170 1.8755 23 1 4.2469 -7.7228 1.0855 24 1 -0.3633 0.0041 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6579 2.1310 0.0004 28 1 4.1185 2.1339 -0.0102 29 1 4.1344 -2.1322 -0.0005 30 1 0.5356 -2.4149 0.0128 31 1 3.1780 -3.6240 0.0048 32 1 3.7781 -7.0809 -1.1979 33 1 3.8133 -5.3036 -1.2895 34 1 2.5315 -6.2127 -2.1255 35 1 1.0163 -10.2519 1.1142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885128348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:11 Heat of formation + Delta-G solvation = 10.808928 kcal Electronic energy + Delta-G solvation = -19344.817255 eV Core-core repulsion = 16176.661731 eV Total energy + Delta-G solvation = -3168.155524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10998 -38.87222 -36.77000 -35.52993 -33.84914 -32.89626 -31.85569 -30.95873 -28.48261 -26.73604 -25.37908 -23.42483 -21.89682 -21.75167 -19.78208 -18.13561 -17.39644 -16.89407 -15.97623 -15.53409 -15.10306 -14.76402 -14.45477 -14.21138 -14.11177 -13.66647 -13.34460 -13.00608 -12.70024 -12.66470 -12.45241 -12.08762 -11.64068 -11.57732 -11.50127 -11.22006 -11.05401 -10.93934 -10.84359 -10.41951 -9.92548 -9.33070 -9.21400 -9.03895 -8.77605 -8.66861 -7.15140 -6.17283 -4.18196 1.03912 1.33471 1.97263 2.25468 3.17879 3.23780 3.27541 3.35400 3.57582 4.28911 4.42417 4.57528 4.75512 4.94262 5.09874 5.20618 5.28923 5.46811 5.47723 5.59841 5.66521 5.84447 5.97853 6.01298 6.17616 6.21207 6.31925 6.36773 6.52695 6.66479 6.99568 7.10352 7.39583 7.66774 7.95911 8.40028 8.93414 8.97638 9.40584 10.95392 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.004301 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.670798 B = 6509.136494 C = 7532.533770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.159 4.159 3 C -0.054 4.054 4 C -0.176 4.176 5 C 0.018 3.982 6 Cl -0.075 7.075 7 C -0.197 4.197 8 C 0.240 3.760 9 N -0.536 5.536 10 N -0.545 5.545 11 C 0.519 3.481 12 O -0.527 6.527 13 C 0.009 3.991 14 H 0.059 0.941 15 C -0.137 4.137 16 C -0.499 4.499 17 H 0.088 0.912 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.870 3.130 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.434 0.566 31 H 0.415 0.585 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 20.908 -1.047 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.165 4.165 3 C -0.073 4.073 4 C -0.197 4.197 5 C -0.009 4.009 6 Cl -0.046 7.046 7 C -0.222 4.222 8 C 0.132 3.868 9 N -0.259 5.259 10 N -0.296 5.296 11 C 0.308 3.692 12 O -0.399 6.399 13 C -0.014 4.014 14 H 0.077 0.923 15 C -0.195 4.195 16 C -0.537 4.537 17 H 0.106 0.894 18 C -0.128 4.128 19 N -0.526 5.526 20 Si 0.697 3.303 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.188 1.188 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.278 0.722 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.588 20.425 -0.983 21.484 hybrid contribution 1.138 -0.190 0.648 1.323 sum 7.726 20.235 -0.335 21.662 Atomic orbital electron populations 1.20647 0.90727 1.02821 1.02481 1.19324 0.96261 0.91012 1.09928 1.20672 0.93028 0.96892 0.96723 1.20711 0.94070 0.96477 1.08447 1.20506 0.83922 0.94475 1.02001 1.98366 1.10488 1.98966 1.96826 1.20218 0.92045 0.97545 1.12376 1.17416 0.90646 0.84486 0.94268 1.43644 1.06938 0.94578 1.80707 1.45880 1.08062 0.96276 1.79347 1.22433 0.89351 0.83292 0.74129 1.90602 1.14397 1.86608 1.48315 1.19341 0.96125 0.89407 0.96549 0.92287 1.22022 0.98520 0.99808 0.99162 1.20686 1.04684 0.95334 1.32956 0.89426 1.25015 0.96427 0.95464 0.95888 1.69862 1.37250 1.03500 1.41987 0.86976 0.84115 0.77720 0.81493 1.19961 1.21019 1.18788 0.91093 0.91014 0.91890 0.85058 0.85376 0.85414 0.72162 0.74363 0.92174 0.95472 0.92573 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.57 36.01 0.34 -0.66 16 2 C -0.16 -1.74 5.90 -104.42 -0.62 -2.36 16 3 C -0.05 -0.51 9.70 -39.62 -0.38 -0.89 16 4 C -0.18 -1.76 9.83 -39.51 -0.39 -2.15 16 5 C 0.02 0.21 6.32 -39.53 -0.25 -0.04 16 6 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 7 C -0.20 -2.45 9.26 -39.34 -0.36 -2.82 16 8 C 0.24 3.10 6.70 -83.79 -0.56 2.53 16 9 N -0.54 -7.99 6.35 32.41 0.21 -7.79 16 10 N -0.55 -9.01 6.08 31.22 0.19 -8.82 16 11 C 0.52 10.98 7.27 -10.99 -0.08 10.90 16 12 O -0.53 -13.08 15.61 5.55 0.09 -12.99 16 13 C 0.01 0.20 2.30 -92.92 -0.21 -0.01 16 14 H 0.06 1.26 5.29 -51.93 -0.27 0.98 16 15 C -0.14 -2.59 9.12 37.16 0.34 -2.25 16 16 C -0.50 -13.78 8.36 -34.44 -0.29 -14.06 16 17 H 0.09 2.76 7.61 -52.49 -0.40 2.36 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 20 Si 0.87 20.16 26.99 -169.99 -4.59 15.58 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -5.56 6.82 56.52 0.39 -5.18 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.51 6.20 -52.49 -0.33 1.19 16 30 H 0.43 6.57 6.00 -182.60 -1.10 5.47 16 31 H 0.42 5.81 5.96 -182.60 -1.09 4.72 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.03 0.40 7.43 -51.93 -0.39 0.02 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -31.42 310.72 -8.31 -39.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.59 Total: 7.58 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.56 Total: -9.82 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 1.17 Total: -42.44 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.58 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.42 -8.31 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885128348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.532 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds