Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.53000 * 109.47240 * 120.00449 * 2 1 3 5 5 C 1.50704 * 109.46910 * 184.99987 * 4 2 1 6 6 C 1.38384 * 119.99811 * 124.72285 * 5 4 2 7 7 N 1.32127 * 119.99756 * 179.78142 * 6 5 4 8 8 C 1.32159 * 119.99822 * 0.49552 * 7 6 5 9 9 C 1.38346 * 120.00148 * 359.73569 * 8 7 6 10 10 N 1.32121 * 119.99881 * 305.00255 * 5 4 2 11 11 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 12 12 C 1.34230 * 116.99836 * 90.00373 * 11 2 1 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 2 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 2 15 15 S 1.80992 * 109.47473 * 179.72204 * 14 12 11 16 16 C 1.76208 * 100.00171 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99543 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99913 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99895 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47424 * 119.99792 * 20 18 16 23 23 H 1.48500 * 109.46979 * 240.00040 * 20 18 16 24 24 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 26 26 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 27 27 H 1.09003 * 109.46848 * 304.99581 * 4 2 1 28 28 H 1.08999 * 109.47472 * 64.99928 * 4 2 1 29 29 H 1.07999 * 120.00615 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.99988 * 179.71683 * 8 7 6 31 31 H 1.07992 * 120.00172 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 33 33 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 34 34 H 0.96998 * 119.99307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 6 4.1514 -0.0891 2.4382 7 7 5.4684 0.0002 2.4955 8 6 6.2032 -0.4037 1.4740 9 6 5.5936 -0.9250 0.3467 10 7 4.2765 -1.0187 0.2913 11 8 2.0139 -0.6845 -1.1856 12 6 2.2170 0.0641 -2.2811 13 8 1.9973 1.2519 -2.2505 14 6 2.7127 -0.5779 -3.5512 15 16 2.8775 0.6822 -4.8399 16 6 3.4556 -0.3160 -6.1719 17 1 3.6000 -1.3766 -6.0286 18 6 3.7243 0.2608 -7.4055 19 7 3.5469 1.5533 -7.5804 20 14 4.3365 -0.7976 -8.8177 21 1 4.4512 -2.2076 -8.3661 22 1 3.3781 -0.7161 -9.9490 23 1 5.6676 -0.3104 -9.2605 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.5508 0.2448 3.2714 30 1 7.2795 -0.3265 1.5190 31 1 6.1940 -1.2554 -0.4878 32 1 3.6826 -1.0410 -3.3697 33 1 2.0021 -1.3383 -3.8753 34 1 3.7351 1.9563 -8.4424 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893411694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = -45.069671 kcal Electronic energy + Delta-G solvation = -19198.812971 eV Core-core repulsion = 16030.278076 eV Total energy + Delta-G solvation = -3168.534895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25082 -39.95673 -36.61320 -34.63904 -33.65112 -32.46354 -31.46873 -29.37557 -27.59872 -25.54245 -24.79563 -23.49021 -21.95019 -20.37392 -17.99364 -17.63701 -17.15337 -17.13377 -16.32153 -15.89776 -15.38644 -14.85840 -14.82714 -14.24459 -14.15906 -13.47401 -13.44213 -13.03169 -12.68330 -12.63365 -12.36047 -12.00141 -11.90839 -11.62413 -11.32438 -11.08577 -11.05514 -10.95378 -10.78524 -10.37787 -9.87533 -9.85882 -9.38037 -9.12822 -9.10281 -8.30933 -6.56717 -6.25367 -3.97153 0.60021 1.01663 2.73950 2.80562 3.20536 3.25669 3.30812 3.51913 3.62083 3.85118 4.10062 4.17009 4.23994 4.50721 4.71458 4.91496 4.94787 5.04216 5.10549 5.17235 5.26004 5.29355 5.40544 5.46819 5.50154 5.77721 5.86614 5.87900 6.06243 6.16970 6.20487 6.86404 7.14003 7.57879 7.66453 8.32162 8.33121 9.20348 10.82258 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004085 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.808129 B = 6852.792189 C = 7697.397762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.082 0.918 4 C -0.064 4.064 5 C 0.079 3.921 6 C 0.048 3.952 7 N -0.440 5.440 8 C 0.040 3.960 9 C 0.058 3.942 10 N -0.414 5.414 11 O -0.335 6.335 12 C 0.482 3.518 13 O -0.497 6.497 14 C -0.125 4.125 15 S -0.062 6.062 16 C -0.533 4.533 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -6.107 19.559 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 H 0.100 0.900 4 C -0.102 4.102 5 C -0.062 4.062 6 C -0.113 4.113 7 N -0.154 5.154 8 C -0.119 4.119 9 C -0.102 4.102 10 N -0.129 5.129 11 O -0.252 6.252 12 C 0.324 3.676 13 O -0.383 6.383 14 C -0.273 4.273 15 S 0.164 5.836 16 C -0.682 4.682 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.184 0.816 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.006 -4.482 19.529 20.062 hybrid contribution 0.740 -1.828 -0.958 2.193 sum -0.266 -6.310 18.571 19.616 Atomic orbital electron populations 1.22202 0.93962 1.03125 1.03370 1.22440 0.94193 0.97060 0.82773 0.89978 1.20732 0.88224 1.03657 0.97611 1.22226 0.97775 0.95323 0.90866 1.23596 0.91767 0.97418 0.98473 1.68429 1.06448 1.12520 1.27998 1.23780 1.01746 0.95904 0.90505 1.23934 0.91643 0.95887 0.98755 1.68439 1.06142 1.11846 1.26427 1.86649 1.77081 1.41796 1.19692 1.23218 0.73905 0.85855 0.84622 1.90641 1.47404 1.16519 1.83771 1.23243 1.04544 1.05489 0.94043 1.85388 1.86979 1.09099 1.02126 1.22888 1.51587 0.96500 0.97180 0.90594 1.24997 0.94992 0.95360 0.98175 1.70029 1.45650 1.10053 1.24594 0.86083 0.78452 0.79960 0.80831 1.19498 1.20521 1.20536 0.91419 0.90883 0.91331 0.87855 0.88268 0.81584 0.81384 0.81131 0.88024 0.88214 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.55 37.16 0.35 -1.42 16 2 C 0.09 1.16 2.54 -26.73 -0.07 1.09 16 3 H 0.08 1.19 7.16 -51.93 -0.37 0.82 16 4 C -0.06 -0.59 5.37 -27.88 -0.15 -0.74 16 5 C 0.08 0.90 6.18 -82.41 -0.51 0.39 16 6 C 0.05 0.48 10.85 -17.37 -0.19 0.29 16 7 N -0.44 -5.03 10.50 -13.06 -0.14 -5.17 16 8 C 0.04 0.41 11.22 -17.37 -0.19 0.22 16 9 C 0.06 0.66 11.22 -17.37 -0.19 0.47 16 10 N -0.41 -5.62 9.11 -9.29 -0.08 -5.71 16 11 O -0.33 -5.46 8.61 -39.26 -0.34 -5.80 16 12 C 0.48 9.57 7.95 36.00 0.29 9.86 16 13 O -0.50 -11.19 15.08 -18.76 -0.28 -11.47 16 14 C -0.13 -2.65 6.27 36.00 0.23 -2.42 16 15 S -0.06 -1.69 20.58 -107.50 -2.21 -3.90 16 16 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 17 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 20 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 0.57 7.89 -51.93 -0.41 0.16 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.17 1.11 7.95 -52.49 -0.42 0.69 16 30 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.10 2.04 8.14 -51.91 -0.42 1.61 16 33 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -35.29 318.19 -6.91 -42.20 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.12 Total: -0.87 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.24 Total: -5.10 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.51 Total: -36.11 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.62 Total: -17.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.29 -6.91 -42.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893411694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.867 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds