Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38124 * 119.97116 * 2 1 4 4 C 1.38875 * 119.94000 * 179.97438 * 3 2 1 5 5 N 1.39740 * 120.05770 * 179.97438 * 4 3 2 6 6 N 1.40106 * 119.99580 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99720 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00343 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99847 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47210 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47015 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00282 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99730 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00260 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99780 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47359 * 89.99734 * 15 13 11 17 17 H 1.48498 * 109.47035 * 209.99496 * 15 13 11 18 18 H 1.48497 * 109.47093 * 329.99619 * 15 13 11 19 19 C 1.38909 * 119.87905 * 359.97438 * 4 3 2 20 20 C 1.38093 * 119.93638 * 0.02562 * 19 4 3 21 21 C 1.38365 * 119.96857 * 179.97438 * 2 1 3 22 22 Cl 1.73594 * 119.93917 * 359.74878 * 21 2 1 23 23 H 1.08997 * 109.47338 * 270.01802 * 1 2 3 24 24 H 1.08994 * 109.47194 * 30.02458 * 1 2 3 25 25 H 1.09013 * 109.46975 * 150.02137 * 1 2 3 26 26 H 1.08001 * 120.02963 * 359.95781 * 3 2 1 27 27 H 0.96992 * 120.00863 * 359.97438 * 5 4 3 28 28 H 0.97002 * 120.00150 * 0.02562 * 6 5 4 29 29 H 1.09005 * 109.46476 * 299.99572 * 9 7 6 30 30 H 1.09000 * 109.47269 * 59.99242 * 9 7 6 31 31 H 1.09006 * 109.46411 * 299.99405 * 10 9 7 32 32 H 1.08994 * 109.47140 * 59.99402 * 10 9 7 33 33 H 0.96998 * 120.00242 * 180.02562 * 14 13 11 34 34 H 1.07996 * 120.03502 * 180.02562 * 19 4 3 35 35 H 1.08006 * 119.97071 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5858 1.1958 0.0005 5 7 4.2863 2.4049 0.0000 6 7 5.6874 2.4026 0.0011 7 6 6.3631 3.5688 0.0000 8 8 5.7585 4.6200 -0.0023 9 6 7.8702 3.5664 0.0006 10 6 8.3825 5.0080 -0.0001 11 6 9.8894 5.0055 0.0011 12 1 10.4280 4.0693 0.0027 13 6 10.5807 6.1985 0.0012 14 7 9.9251 7.3385 -0.0003 15 14 12.4488 6.1955 0.0034 16 1 12.9455 6.1938 -1.3960 17 1 12.9449 7.4077 0.7032 18 1 12.9409 4.9827 0.7048 19 6 4.2771 -0.0090 0.0016 20 6 3.5821 -1.2024 0.0016 21 6 2.1982 -1.1987 0.0005 22 17 1.3278 -2.7006 0.0078 23 1 -0.3634 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5136 26 1 1.6570 2.1319 -0.0007 27 1 3.8028 3.2457 -0.0011 28 1 6.1711 1.5618 0.0018 29 1 8.2322 3.0530 0.8914 30 1 8.2330 3.0508 -0.8886 31 1 8.0203 5.5217 -0.8907 32 1 8.0196 5.5230 0.8893 33 1 10.4114 8.1777 -0.0006 34 1 5.3571 -0.0126 0.0025 35 1 4.1191 -2.1395 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928340403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = 1.550158 kcal Electronic energy + Delta-G solvation = -18461.503727 eV Core-core repulsion = 15292.946713 eV Total energy + Delta-G solvation = -3168.557014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16239 -39.12773 -36.82062 -35.73717 -33.58518 -32.89326 -32.19792 -30.95289 -28.29509 -27.20828 -25.60605 -23.04960 -22.25676 -21.08982 -20.15383 -17.92394 -17.52459 -16.73525 -16.37862 -15.50536 -15.32858 -15.25961 -14.49782 -14.44826 -14.15642 -13.65625 -13.31538 -13.28799 -12.70625 -12.60465 -12.31522 -12.22601 -12.14486 -11.64402 -11.29209 -11.02931 -10.95163 -10.86296 -10.66895 -10.08954 -9.83451 -9.46584 -9.29364 -9.18460 -9.04993 -8.39743 -7.31865 -6.03401 -4.08504 1.03859 1.12934 1.96346 2.10848 2.96212 3.29314 3.35795 3.38002 3.45336 4.19596 4.41850 4.44002 4.56375 4.89856 5.04044 5.17576 5.27673 5.31990 5.34374 5.37064 5.56479 5.79556 5.91613 5.98201 6.03640 6.03897 6.16174 6.37553 6.63881 6.89786 7.38025 7.65617 7.70854 7.73488 7.97182 8.28350 8.57401 8.99235 9.55668 11.07494 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.048337 B = 0.002507 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.132023 B =11167.782230 C =11721.163814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.019 4.019 3 C -0.187 4.187 4 C 0.235 3.765 5 N -0.538 5.538 6 N -0.539 5.539 7 C 0.510 3.490 8 O -0.532 6.532 9 C -0.119 4.119 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.200 4.200 20 C -0.049 4.049 21 C -0.102 4.102 22 Cl -0.082 7.082 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.133 0.867 27 H 0.434 0.566 28 H 0.419 0.581 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.127 0.873 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.819 -18.836 0.030 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.021 4.021 3 C -0.211 4.211 4 C 0.129 3.871 5 N -0.260 5.260 6 N -0.289 5.289 7 C 0.299 3.701 8 O -0.405 6.405 9 C -0.160 4.160 10 C 0.000 4.000 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.223 4.223 20 C -0.068 4.068 21 C -0.131 4.131 22 Cl -0.053 7.053 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.151 0.849 27 H 0.277 0.723 28 H 0.260 0.740 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.066 -17.929 0.034 24.753 hybrid contribution 1.057 -0.147 0.001 1.067 sum -16.009 -18.076 0.035 24.146 Atomic orbital electron populations 1.20896 0.90329 1.03491 1.03006 1.19394 0.96267 0.90597 0.95833 1.20226 0.91099 0.98115 1.11707 1.17823 0.90876 0.85112 0.93317 1.43515 0.94552 1.06700 1.81248 1.45527 0.93897 1.10728 1.78714 1.22051 0.91506 0.81614 0.74935 1.90696 1.70267 1.30810 1.48730 1.21896 0.85619 1.05328 1.03160 1.18932 0.95109 0.87094 0.98868 1.21174 0.91274 0.92503 1.51834 0.92441 1.25024 0.98562 0.95604 0.95154 1.69986 1.35512 0.97338 1.49883 0.86562 0.85531 0.77569 0.78120 1.20616 1.21186 1.19835 1.20370 0.99683 0.90482 1.11815 1.20710 0.91776 0.98225 0.96084 1.20429 0.92075 0.86265 1.14323 1.98327 1.76912 1.32644 1.97412 0.90502 0.91026 0.90698 0.84950 0.72277 0.73989 0.89574 0.89568 0.95633 0.95626 0.92842 0.85559 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.61 36.01 0.35 -0.53 16 2 C -0.02 -0.18 5.88 -104.62 -0.62 -0.80 16 3 C -0.19 -1.85 9.55 -39.39 -0.38 -2.23 16 4 C 0.24 2.59 6.72 -83.77 -0.56 2.02 16 5 N -0.54 -6.80 6.45 32.42 0.21 -6.59 16 6 N -0.54 -7.24 6.22 31.22 0.19 -7.05 16 7 C 0.51 9.12 7.95 -10.98 -0.09 9.03 16 8 O -0.53 -11.74 15.82 5.56 0.09 -11.65 16 9 C -0.12 -2.21 5.64 -27.88 -0.16 -2.37 16 10 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 11 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 12 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 C -0.20 -1.99 9.48 -39.39 -0.37 -2.36 16 20 C -0.05 -0.46 9.82 -39.57 -0.39 -0.84 16 21 C -0.10 -1.00 6.31 -39.48 -0.25 -1.25 16 22 Cl -0.08 -0.74 27.28 -51.86 -1.41 -2.15 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.07 0.53 6.90 -51.92 -0.36 0.17 16 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.43 5.66 8.01 -182.60 -1.46 4.19 16 28 H 0.42 4.33 6.61 -182.59 -1.21 3.12 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.13 1.05 6.20 -52.49 -0.33 0.73 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -32.60 318.30 -9.67 -42.28 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.27 Total: 2.00 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.99 Total: -11.71 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 1.14 Total: -39.71 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.60 -9.67 -42.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928340403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.826 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds