Wall clock time and date at job start Tue Mar 31 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.09005 * 109.49548 * 301.38071 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21565 * 119.99552 * 359.97438 * 16 15 13 18 18 C 1.47752 * 120.00323 * 179.97438 * 16 15 13 19 19 C 1.39349 * 124.11360 * 179.72336 * 18 16 15 20 20 N 1.30095 * 112.14016 * 179.84699 * 19 18 16 21 21 S 1.55916 * 108.75492 * 0.40528 * 20 19 18 22 22 N 1.31491 * 124.11214 * 0.02562 * 18 16 15 23 23 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 24 24 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 25 25 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 26 26 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 27 27 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 28 28 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 29 29 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 30 30 H 1.08997 * 109.46143 * 178.62422 * 12 11 10 31 31 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 32 32 H 1.08002 * 123.92832 * 0.02562 * 19 18 16 33 33 H 1.08998 * 109.59046 * 353.41506 * 23 9 7 34 34 H 1.08998 * 109.58688 * 113.84707 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1961 -3.5680 1.4743 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4500 -5.4661 0.0021 18 6 6.6341 -6.0020 -0.6297 19 6 6.3724 -7.2867 -1.1019 20 7 7.4444 -7.8724 -1.5494 21 16 8.6536 -6.9030 -1.3789 22 7 7.9069 -5.6912 -0.7413 23 6 4.2482 -2.2197 -0.2010 24 1 -0.4850 -0.8368 -0.0738 25 1 4.5577 0.3873 0.9041 26 1 3.0150 0.2936 1.7896 27 1 5.0019 -0.3775 3.1898 28 1 3.7953 -1.6762 3.0220 29 1 6.3220 -1.3817 1.3344 30 1 6.1094 -2.5275 2.6796 31 1 6.8781 -3.5836 0.3180 32 1 5.3930 -7.7419 -1.0994 33 1 3.6911 -2.9191 -0.8243 34 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006796691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:58 Heat of formation + Delta-G solvation = 44.858740 kcal Electronic energy + Delta-G solvation = -19841.847802 eV Core-core repulsion = 16709.505246 eV Total energy + Delta-G solvation = -3132.342556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31103 -39.36226 -37.56406 -34.66351 -33.80216 -32.52295 -30.77097 -29.49735 -27.46205 -25.02897 -23.86901 -22.12423 -21.70819 -20.34833 -19.70432 -19.58378 -17.74120 -17.29247 -16.28453 -15.90829 -15.60537 -15.10447 -14.65090 -14.10191 -14.04635 -13.53721 -13.46488 -12.87894 -12.60026 -12.34430 -12.10449 -11.72643 -11.59955 -11.45895 -11.32352 -11.12805 -10.92087 -10.63412 -10.19540 -10.03164 -9.81488 -9.61449 -9.48649 -9.14073 -9.03898 -8.44561 -7.03695 -6.21630 -3.33563 0.14922 1.09921 1.33685 1.34483 3.03549 3.09105 3.39734 3.54290 3.70134 4.23823 4.59384 4.65775 4.85186 5.05103 5.14634 5.23064 5.27320 5.43149 5.52944 5.78573 5.91296 6.00849 6.11558 6.18262 6.29960 6.39579 6.43162 6.59507 6.65554 6.73684 6.90858 7.50909 8.05553 8.14677 8.47476 9.09473 9.60495 10.21516 11.16662 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.003968 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.308008 B = 7054.836188 C = 7392.843132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.343 4.343 8 H 0.066 0.934 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.092 0.908 15 N -0.700 5.700 16 C 0.599 3.401 17 O -0.516 6.516 18 C 0.019 3.981 19 C 0.090 3.910 20 N -0.578 5.578 21 S 0.708 5.292 22 N -0.547 5.547 23 C 0.142 3.858 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.404 0.596 32 H 0.216 0.784 33 H 0.064 0.936 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.994 -10.969 0.521 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.216 4.216 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.472 4.472 8 H 0.084 0.916 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.110 0.890 15 N -0.350 5.350 16 C 0.378 3.622 17 O -0.390 6.390 18 C -0.157 4.157 19 C -0.104 4.104 20 N -0.418 5.418 21 S 0.750 5.250 22 N -0.397 5.397 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.239 0.761 32 H 0.232 0.768 33 H 0.083 0.917 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.941 -9.862 0.115 23.147 hybrid contribution -1.037 -1.425 0.286 1.786 sum 19.904 -11.287 0.401 22.885 Atomic orbital electron populations 1.70894 1.06031 1.30044 1.49194 1.26252 0.96622 1.01228 0.97524 0.83723 0.74641 0.75651 0.75949 1.22122 1.22760 1.21195 1.20265 0.85337 0.95156 1.46461 0.91641 1.44276 1.07247 1.36729 1.44153 1.21448 0.97265 0.92391 0.89425 1.22002 0.97622 0.98624 0.98875 1.21680 0.98413 0.97249 0.98062 1.21768 0.89530 0.90417 0.96427 0.89000 1.45942 1.12957 1.14276 1.61838 1.16757 0.85809 0.81250 0.78414 1.90887 1.17827 1.74935 1.55351 1.22688 0.90172 0.96854 1.05998 1.23832 0.99409 0.91150 0.95979 1.72278 1.06737 1.37289 1.25535 1.79026 1.18012 0.89712 1.38289 1.72467 1.11194 1.34623 1.21423 1.21153 0.92720 0.91861 0.92832 0.92635 0.95514 0.90594 0.92056 0.91523 0.91891 0.92363 0.76086 0.76799 0.91731 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.93 13.70 55.49 0.76 -28.17 16 2 C -0.01 -0.44 5.24 -17.43 -0.09 -0.53 16 3 Si 1.07 26.46 24.73 -169.99 -4.20 22.25 16 4 H -0.29 -6.74 6.57 56.52 0.37 -6.37 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -6.76 6.80 56.52 0.38 -6.37 16 7 C -0.34 -9.86 9.87 -15.06 -0.15 -10.01 16 8 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 9 N -0.60 -14.55 2.73 -172.58 -0.47 -15.02 16 10 C 0.12 2.55 4.21 -3.71 -0.02 2.54 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.70 5.36 -26.69 -0.14 -1.84 16 13 C 0.12 2.10 2.59 -68.03 -0.18 1.93 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.70 -9.96 5.08 -54.88 -0.28 -10.24 16 16 C 0.60 9.02 7.79 -12.37 -0.10 8.92 16 17 O -0.52 -9.53 16.47 5.31 0.09 -9.44 16 18 C 0.02 0.23 6.81 -83.71 -0.57 -0.34 16 19 C 0.09 0.99 11.22 -17.87 -0.20 0.79 16 20 N -0.58 -5.95 11.41 19.42 0.22 -5.73 16 21 S 0.71 5.67 23.69 -107.50 -2.55 3.12 16 22 N -0.55 -5.86 11.00 23.17 0.25 -5.60 16 23 C 0.14 2.95 6.06 -3.93 -0.02 2.93 16 24 H 0.26 8.24 8.73 -40.82 -0.36 7.89 16 25 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 26 H 0.08 1.76 4.76 -51.93 -0.25 1.51 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.40 4.83 8.19 -40.82 -0.33 4.50 16 32 H 0.22 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -33.27 295.63 -7.26 -40.54 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.91 Total: 1.84 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.63 Total: 2.00 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.49 Total: -64.77 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -4.20 Total: 22.25 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -2.55 Total: 3.12 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.27 -7.26 -40.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006796691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.396 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds