Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48500 * 109.47290 * 240.00363 * 3 2 1 5 5 H 1.48506 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47474 * 119.99824 * 3 2 1 7 7 C 1.38815 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99907 * 197.35495 * 7 2 1 9 9 N 1.36936 * 119.99733 * 17.35625 * 7 2 1 10 10 C 1.46925 * 120.63122 * 207.69575 * 9 7 2 11 11 C 1.53187 * 108.77898 * 233.59060 * 10 9 7 12 12 C 1.53044 * 109.34004 * 305.38079 * 11 10 9 13 13 C 1.53034 * 109.53878 * 61.31410 * 12 11 10 14 14 H 1.09002 * 109.49957 * 58.65554 * 13 12 11 15 15 N 1.46500 * 109.49821 * 178.72304 * 13 12 11 16 16 C 1.34785 * 119.99805 * 204.94136 * 15 13 12 17 17 O 1.21622 * 119.99985 * 359.97438 * 16 15 13 18 18 C 1.47167 * 119.99530 * 179.97438 * 16 15 13 19 19 C 1.38252 * 128.47224 * 180.02562 * 18 16 15 20 20 N 1.31239 * 111.88883 * 179.97438 * 19 18 16 21 21 N 1.27334 * 120.03978 * 359.97438 * 20 19 18 22 22 S 1.56640 * 109.74001 * 0.02562 * 21 20 19 23 23 C 1.46931 * 120.63205 * 27.67540 * 9 7 2 24 24 H 0.97005 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58822 * 353.37685 * 10 9 7 26 26 H 1.09004 * 109.58850 * 113.79640 * 10 9 7 27 27 H 1.08996 * 109.50123 * 65.31641 * 11 10 9 28 28 H 1.09007 * 109.50147 * 185.38339 * 11 10 9 29 29 H 1.09007 * 109.42713 * 301.31358 * 12 11 10 30 30 H 1.08990 * 109.48760 * 181.35859 * 12 11 10 31 31 H 0.96998 * 120.00193 * 24.93121 * 15 13 12 32 32 H 1.07996 * 124.05266 * 359.96909 * 19 18 16 33 33 H 1.08995 * 109.58696 * 6.62701 * 23 9 7 34 34 H 1.08996 * 109.70209 * 246.26601 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3527 10 6 1.8191 -3.6546 0.1822 11 6 2.0740 -4.6105 -0.9874 12 6 0.8188 -4.6908 -1.8592 13 6 0.5005 -3.3057 -2.4270 14 1 1.3488 -2.9480 -3.0106 15 7 -0.6834 -3.3896 -3.2858 16 6 -0.8705 -2.4834 -4.2658 17 8 -0.0567 -1.5958 -4.4369 18 6 -2.0595 -2.5680 -5.1289 19 6 -2.4229 -1.7415 -6.1759 20 7 -3.5536 -2.1172 -6.7261 21 7 -4.1719 -3.1369 -6.2796 22 16 -3.3757 -3.7554 -5.0808 23 6 0.2277 -2.3350 -1.2736 24 1 -0.4851 0.8401 -0.0004 25 1 2.7398 -3.5172 0.7492 26 1 1.0467 -4.0683 0.8307 27 1 2.9078 -4.2409 -1.5842 28 1 2.3137 -5.6015 -0.6018 29 1 -0.0202 -5.0374 -1.2558 30 1 0.9893 -5.3888 -2.6787 31 1 -1.3325 -4.0973 -3.1492 32 1 -1.8456 -0.8890 -6.5019 33 1 0.0984 -1.3269 -1.6673 34 1 -0.6758 -2.6397 -0.7456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006812571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = 59.332755 kcal Electronic energy + Delta-G solvation = -19943.342378 eV Core-core repulsion = 16811.627462 eV Total energy + Delta-G solvation = -3131.714915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91905 -39.53111 -37.38578 -34.33401 -32.82255 -32.17217 -30.13081 -29.25116 -27.33636 -25.33528 -23.53721 -22.26042 -21.54992 -20.46920 -19.53050 -19.14935 -17.33763 -16.84451 -15.96682 -15.84432 -15.14416 -14.82101 -14.37489 -14.16821 -13.98649 -13.57234 -13.08895 -12.82513 -12.52410 -12.41019 -12.16577 -11.92872 -11.08457 -10.90433 -10.73679 -10.57244 -10.43891 -10.32955 -10.21439 -10.17697 -10.00327 -9.94465 -9.78954 -9.60760 -8.78448 -8.47867 -6.72308 -5.80832 -3.23872 -0.37563 0.67590 1.34060 1.88164 3.05085 3.16509 3.40728 3.46819 3.48814 3.90842 4.49877 4.60347 4.74428 5.24524 5.32302 5.46129 5.48774 5.54742 5.58377 5.97492 6.04603 6.23452 6.34417 6.35319 6.58490 6.63769 6.75090 6.89183 7.16393 7.46052 7.60772 7.63296 7.78987 8.23378 8.42667 9.17436 9.81412 10.35691 11.27338 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.005259 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.919500 B = 5323.193453 C = 6363.846334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.141 3.859 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.116 3.884 14 H 0.087 0.913 15 N -0.708 5.708 16 C 0.594 3.406 17 O -0.505 6.505 18 C -0.268 4.268 19 C 0.067 3.933 20 N -0.251 5.251 21 N -0.263 5.263 22 S 0.410 5.590 23 C 0.165 3.835 24 H 0.255 0.745 25 H 0.056 0.944 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.392 0.608 32 H 0.216 0.784 33 H 0.096 0.904 34 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 -11.088 -7.980 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.155 4.155 13 C 0.011 3.989 14 H 0.106 0.894 15 N -0.359 5.359 16 C 0.375 3.625 17 O -0.380 6.380 18 C -0.409 4.409 19 C -0.100 4.100 20 N -0.116 5.116 21 N -0.244 5.244 22 S 0.545 5.455 23 C 0.038 3.962 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.225 0.775 32 H 0.233 0.767 33 H 0.114 0.886 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.564 -11.321 -8.392 15.150 hybrid contribution 1.107 1.518 0.065 1.880 sum -4.457 -9.802 -8.326 13.612 Atomic orbital electron populations 1.69996 1.05373 1.25782 1.53172 1.25029 0.95262 0.98536 1.00326 0.86365 0.79009 0.83226 0.78156 1.20816 1.21601 1.20846 1.19114 0.92793 0.84780 1.42132 0.91526 1.43945 1.35975 1.01727 1.49330 1.20974 0.97844 0.86782 0.92884 1.22005 0.96845 0.99493 0.98724 1.21690 0.99197 0.95692 0.98928 1.22154 0.86324 0.97481 0.92914 0.89445 1.46008 1.26739 1.30208 1.32936 1.16466 0.83257 0.82827 0.79918 1.90908 1.43586 1.33436 1.70033 1.28290 1.04162 1.03266 1.05221 1.24479 0.92352 1.01057 0.92073 1.70676 1.07686 1.07805 1.25433 1.78859 1.24983 1.09538 1.11059 1.82520 1.07081 1.27961 1.27987 1.21112 0.88992 0.98910 0.87219 0.93532 0.92505 0.96293 0.92015 0.92438 0.92037 0.92877 0.77490 0.76728 0.88589 0.96261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.26 -7.06 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.33 2.99 -172.32 -0.52 -14.85 16 10 C 0.14 2.79 6.52 -3.71 -0.02 2.76 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.22 16 12 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 13 C 0.12 2.09 2.60 -67.81 -0.18 1.91 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -10.54 5.08 -54.84 -0.28 -10.82 16 16 C 0.59 9.64 7.77 -12.63 -0.10 9.54 16 17 O -0.50 -10.39 16.64 5.26 0.09 -10.30 16 18 C -0.27 -3.49 6.81 -35.95 -0.25 -3.73 16 19 C 0.07 0.84 11.55 -17.80 -0.21 0.64 16 20 N -0.25 -3.37 11.54 30.36 0.35 -3.02 16 21 N -0.26 -3.34 12.51 60.35 0.75 -2.58 16 22 S 0.41 4.14 23.05 -107.50 -2.48 1.66 16 23 C 0.16 3.82 4.89 -3.70 -0.02 3.80 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.39 4.43 8.03 -40.82 -0.33 4.11 16 32 H 0.22 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.10 2.63 6.04 -51.93 -0.31 2.32 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 302.66 15.07 4.56 4.56 Total: -1.00 -32.26 302.66 -7.18 -39.44 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.95 Total: 0.68 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.93 Total: -56.84 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.48 Total: 1.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.26 -7.18 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006812571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.774 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds