Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 14 14 H 1.09002 * 109.50003 * 301.41194 * 13 12 11 15 15 N 1.46501 * 109.49816 * 181.31319 * 13 12 11 16 16 C 1.34776 * 119.99832 * 155.15979 * 15 13 12 17 17 O 1.21616 * 120.00115 * 0.02562 * 16 15 13 18 18 C 1.47177 * 119.99846 * 180.02562 * 16 15 13 19 19 C 1.38242 * 128.47346 * 180.02562 * 18 16 15 20 20 N 1.31241 * 111.88818 * 179.97438 * 19 18 16 21 21 N 1.27332 * 120.03770 * 359.97438 * 20 19 18 22 22 S 1.56643 * 109.74153 * 359.69609 * 21 20 19 23 23 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 24 24 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 25 25 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 26 26 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 27 27 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 28 28 H 1.08998 * 109.43227 * 174.72194 * 11 10 9 29 29 H 1.08994 * 109.46262 * 178.48775 * 12 11 10 30 30 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 31 31 H 0.96997 * 120.00007 * 335.16990 * 15 13 12 32 32 H 1.08001 * 124.06253 * 0.02562 * 19 18 16 33 33 H 1.09000 * 109.58078 * 353.36597 * 23 9 7 34 34 H 1.08997 * 109.58583 * 113.65443 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 6 2.1821 -4.5601 -1.1359 14 1 3.0880 -4.1723 -1.6019 15 7 2.4267 -5.9190 -0.6461 16 6 3.6356 -6.2491 -0.1500 17 8 4.5232 -5.4188 -0.1085 18 6 3.8814 -7.6144 0.3416 19 6 5.0415 -8.1385 0.8806 20 7 4.8996 -9.3999 1.2140 21 7 3.7859 -9.9876 1.0257 22 16 2.7591 -8.9863 0.3958 23 6 1.7838 -3.6581 0.0365 24 1 -0.4850 -0.8357 0.0846 25 1 -0.5659 -2.5744 -1.1452 26 1 0.3218 -1.2239 -1.8971 27 1 1.7332 -2.7951 -3.1517 28 1 0.0231 -3.1915 -3.4496 29 1 1.3194 -5.2446 -2.9876 30 1 0.1369 -4.9483 -1.6909 31 1 1.7187 -6.5811 -0.6790 32 1 5.9547 -7.5772 1.0124 33 1 2.6246 -3.5585 0.7230 34 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006812574.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = 55.885180 kcal Electronic energy + Delta-G solvation = -19709.046774 eV Core-core repulsion = 16577.182361 eV Total energy + Delta-G solvation = -3131.864413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09655 -39.78739 -37.61181 -34.71533 -32.84332 -32.22209 -30.49238 -29.18540 -27.46003 -25.17081 -23.69978 -22.34864 -21.66928 -20.69357 -19.66765 -19.28841 -17.54981 -17.40909 -16.16756 -16.09212 -15.15041 -14.93398 -14.55283 -14.18392 -14.11231 -13.63366 -13.43631 -12.99953 -12.84254 -12.49389 -12.25898 -12.08500 -11.33630 -10.85614 -10.76176 -10.60909 -10.45821 -10.38697 -10.33894 -10.14876 -10.11952 -10.03419 -9.95297 -9.41905 -9.12215 -8.37119 -6.93886 -6.09925 -3.28933 -0.55364 0.50274 1.17304 1.70751 2.83407 2.89107 3.50605 3.52962 3.71169 3.73817 4.41673 4.49351 4.61372 5.06346 5.22900 5.27816 5.31562 5.45530 5.51535 5.81578 5.89360 6.01202 6.23330 6.35947 6.36710 6.44010 6.58236 6.73485 6.98021 7.10797 7.26157 7.37934 7.95085 8.02740 8.54838 9.06316 9.80347 10.22116 11.18291 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.003983 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.083128 B = 7028.828509 C = 7556.947765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.351 4.351 8 H 0.057 0.943 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.116 4.116 13 C 0.126 3.874 14 H 0.093 0.907 15 N -0.711 5.711 16 C 0.595 3.405 17 O -0.508 6.508 18 C -0.275 4.275 19 C 0.070 3.930 20 N -0.251 5.251 21 N -0.259 5.259 22 S 0.414 5.586 23 C 0.143 3.857 24 H 0.268 0.732 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.394 0.606 32 H 0.217 0.783 33 H 0.061 0.939 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -16.731 -3.096 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.223 4.223 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.480 4.480 8 H 0.075 0.925 9 N -0.317 5.317 10 C 0.021 3.979 11 C -0.174 4.174 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.111 0.889 15 N -0.362 5.362 16 C 0.377 3.623 17 O -0.383 6.383 18 C -0.417 4.417 19 C -0.096 4.096 20 N -0.115 5.115 21 N -0.241 5.241 22 S 0.549 5.451 23 C 0.015 3.985 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.079 0.921 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.990 -16.168 -2.866 16.540 hybrid contribution 0.767 -0.951 0.088 1.225 sum 2.757 -17.118 -2.779 17.560 Atomic orbital electron populations 1.70797 1.06584 1.30263 1.47893 1.25884 0.96505 1.01484 0.98458 0.83527 0.74786 0.75904 0.76351 1.21079 1.21935 1.21905 1.20001 0.97271 0.88050 1.42641 0.92495 1.44066 1.46646 1.01079 1.39945 1.21113 0.90465 0.99130 0.87198 1.22136 1.01315 0.94539 0.99387 1.21694 0.97558 0.98706 0.97467 1.21884 0.99634 0.79518 0.96848 0.88936 1.46050 1.12217 1.14811 1.63122 1.16493 0.83455 0.83955 0.78362 1.90902 1.43768 1.48958 1.54665 1.28231 0.99120 1.02031 1.12277 1.24499 1.00148 0.89580 0.95404 1.70695 1.13463 1.09272 1.18108 1.78882 1.01450 1.25789 1.17940 1.82575 1.21988 0.96465 1.44082 1.21192 0.97928 0.86532 0.92861 0.92103 0.96281 0.90035 0.91908 0.92325 0.92571 0.92008 0.77208 0.76669 0.92061 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 12.45 55.49 0.69 -26.18 16 2 C -0.02 -0.59 4.69 -17.43 -0.08 -0.68 16 3 Si 1.06 25.10 29.98 -169.99 -5.10 20.00 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.35 -9.74 9.48 -15.06 -0.14 -9.89 16 8 H 0.06 1.63 7.94 -52.49 -0.42 1.21 16 9 N -0.59 -14.48 2.83 -172.05 -0.49 -14.96 16 10 C 0.15 3.23 4.72 -3.48 -0.02 3.22 16 11 C -0.13 -2.29 6.10 -26.38 -0.16 -2.45 16 12 C -0.12 -1.67 5.35 -26.69 -0.14 -1.81 16 13 C 0.13 2.06 2.60 -67.81 -0.18 1.89 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.71 -9.12 5.08 -54.84 -0.28 -9.40 16 16 C 0.60 8.30 7.77 -12.63 -0.10 8.20 16 17 O -0.51 -9.16 16.64 5.26 0.09 -9.07 16 18 C -0.28 -3.03 6.81 -35.95 -0.24 -3.28 16 19 C 0.07 0.76 11.55 -17.80 -0.21 0.55 16 20 N -0.25 -2.97 11.54 30.36 0.35 -2.62 16 21 N -0.26 -2.91 12.51 60.35 0.75 -2.16 16 22 S 0.41 3.53 23.05 -107.50 -2.48 1.05 16 23 C 0.14 2.94 6.09 -3.71 -0.02 2.92 16 24 H 0.27 7.88 6.71 -40.82 -0.27 7.61 16 25 H 0.02 0.42 7.85 -51.93 -0.41 0.02 16 26 H 0.08 2.04 6.38 -51.93 -0.33 1.71 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.39 3.73 8.03 -40.82 -0.33 3.41 16 32 H 0.22 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -32.43 301.77 -7.10 -39.53 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.90 Total: 0.59 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.29 Total: -1.32 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 1.03 Total: -55.32 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.10 Total: 20.00 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.48 Total: 1.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.43 -7.10 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006812574.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.410 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds