Wall clock time and date at job start Tue Mar 31 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47341 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47162 * 120.00223 * 3 2 1 7 7 C 1.38812 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00031 * 197.35358 * 7 2 1 9 9 N 1.36935 * 119.99673 * 17.35634 * 7 2 1 10 10 C 1.46931 * 120.63004 * 27.67781 * 9 7 2 11 11 C 1.53195 * 108.77449 * 126.41235 * 10 9 7 12 12 C 1.53035 * 109.31506 * 54.63427 * 11 10 9 13 13 C 1.53043 * 109.53629 * 298.63589 * 12 11 10 14 14 H 1.09004 * 109.49228 * 301.40717 * 13 12 11 15 15 N 1.46506 * 109.49815 * 181.35102 * 13 12 11 16 16 C 1.34777 * 119.99996 * 155.06091 * 15 13 12 17 17 O 1.21605 * 119.99773 * 359.97438 * 16 15 13 18 18 C 1.47449 * 119.99778 * 179.97438 * 16 15 13 19 19 C 1.37974 * 124.15251 * 180.02562 * 18 16 15 20 20 S 1.72102 * 104.03343 * 179.97438 * 19 18 16 21 21 N 1.56406 * 96.15489 * 0.02562 * 20 19 18 22 22 N 1.27426 * 109.87363 * 359.74775 * 21 20 19 23 23 C 1.46990 * 120.61401 * 207.69198 * 9 7 2 24 24 H 0.97001 * 119.99954 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.58747 * 6.62306 * 10 9 7 26 26 H 1.09007 * 109.69886 * 246.26690 * 10 9 7 27 27 H 1.08994 * 109.49622 * 294.67974 * 11 10 9 28 28 H 1.09007 * 109.51656 * 174.59770 * 11 10 9 29 29 H 1.08994 * 109.46411 * 178.61177 * 12 11 10 30 30 H 1.09006 * 109.46311 * 58.65059 * 12 11 10 31 31 H 0.96998 * 119.99411 * 335.05821 * 15 13 12 32 32 H 1.08005 * 127.98488 * 359.97438 * 19 18 16 33 33 H 1.09008 * 109.57849 * 113.81186 * 23 9 7 34 34 H 1.08997 * 109.63373 * 353.36322 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0535 -1.2232 0.2795 9 7 1.3724 -2.3612 -0.3527 10 6 0.2278 -2.3349 -1.2737 11 6 0.5006 -3.3056 -2.4270 12 6 0.8184 -4.6905 -1.8586 13 6 2.0741 -4.6104 -0.9874 14 1 2.9080 -4.2408 -1.5844 15 7 2.3961 -5.9426 -0.4699 16 6 3.6629 -6.2419 -0.1206 17 8 4.5388 -5.4062 -0.2356 18 6 3.9868 -7.5825 0.4008 19 6 5.2513 -7.9800 0.7837 20 16 5.0387 -9.6082 1.2994 21 7 3.5011 -9.6729 1.0206 22 7 3.0961 -8.5543 0.5641 23 6 1.8198 -3.6549 0.1826 24 1 -0.4850 0.8401 0.0004 25 1 0.0986 -1.3268 -1.6673 26 1 -0.6758 -2.6397 -0.7455 27 1 1.3492 -2.9482 -3.0102 28 1 -0.3800 -3.3681 -3.0664 29 1 0.9887 -5.3890 -2.6778 30 1 -0.0207 -5.0367 -1.2551 31 1 1.6974 -6.6092 -0.3785 32 1 6.1639 -7.4028 0.7643 33 1 1.0473 -4.0688 0.8310 34 1 2.7407 -3.5181 0.7494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008086625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:21 Heat of formation + Delta-G solvation = 56.643691 kcal Electronic energy + Delta-G solvation = -19734.645283 eV Core-core repulsion = 16602.813761 eV Total energy + Delta-G solvation = -3131.831522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24467 -39.36705 -37.33690 -34.39415 -32.60251 -32.16647 -30.45903 -28.91532 -27.17204 -25.27787 -24.09407 -22.13024 -21.67663 -20.80586 -19.67614 -18.87280 -16.96198 -16.66995 -16.19128 -15.89303 -15.42128 -14.76246 -14.61283 -14.08263 -13.82541 -13.42161 -13.12099 -12.85799 -12.46542 -12.39931 -12.29168 -11.82108 -11.11359 -10.91230 -10.78486 -10.62248 -10.31497 -10.27683 -10.23324 -10.21721 -10.16262 -9.90363 -9.67498 -9.63820 -8.88972 -8.39922 -6.67019 -5.77226 -3.19414 -0.18926 0.65921 1.27277 1.29858 3.13214 3.19187 3.41973 3.46704 3.49456 3.68436 4.47296 4.53462 4.77634 5.13260 5.29363 5.38579 5.54257 5.61482 5.72578 6.06249 6.12428 6.25239 6.50758 6.59416 6.63039 6.68277 6.82744 6.95155 7.21117 7.36963 7.65233 7.66138 7.83706 8.21163 8.46857 9.23071 9.85253 10.41024 11.31519 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.003826 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.766562 B = 7316.535111 C = 7903.996329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.090 0.910 15 N -0.699 5.699 16 C 0.598 3.402 17 O -0.521 6.521 18 C -0.016 4.016 19 C -0.235 4.235 20 S 0.451 5.549 21 N -0.291 5.291 22 N -0.210 5.210 23 C 0.141 3.859 24 H 0.254 0.746 25 H 0.090 0.910 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.405 0.595 32 H 0.209 0.791 33 H 0.020 0.980 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 -18.763 -0.325 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.108 0.892 15 N -0.349 5.349 16 C 0.378 3.622 17 O -0.395 6.395 18 C -0.164 4.164 19 C -0.392 4.392 20 S 0.586 5.414 21 N -0.272 5.272 22 N -0.081 5.081 23 C 0.014 3.986 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.226 0.774 33 H 0.037 0.963 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.577 -19.683 0.054 21.092 hybrid contribution 0.367 1.951 -0.336 2.014 sum 7.944 -17.732 -0.281 19.432 Atomic orbital electron populations 1.70033 1.05245 1.25623 1.53910 1.25020 0.95288 0.98384 1.00847 0.86346 0.78899 0.83182 0.78229 1.20953 1.21642 1.20863 1.19187 0.92820 0.84679 1.41513 0.91560 1.44007 1.35615 1.00961 1.50397 1.20852 0.88562 0.98600 0.87876 1.22181 1.00520 0.95051 1.00132 1.21686 0.96640 0.98717 0.98312 1.21897 0.98195 0.80567 0.97413 0.89232 1.46023 1.08613 1.16324 1.63945 1.16649 0.83702 0.83498 0.78350 1.90876 1.47216 1.47404 1.54041 1.22871 0.89619 0.97719 1.06165 1.28896 1.03548 1.02923 1.03848 1.81491 1.08911 1.05240 1.45708 1.78665 1.09798 1.18460 1.20237 1.71531 1.29861 0.94965 1.11767 1.21201 0.98101 0.86852 0.92487 0.93591 0.89212 0.96231 0.92368 0.92590 0.92914 0.92004 0.76005 0.77389 0.96252 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.99 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.87 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -14.96 3.00 -172.26 -0.52 -15.48 16 10 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 13 C 0.12 2.25 2.60 -67.81 -0.18 2.07 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.70 -10.74 5.08 -54.75 -0.28 -11.02 16 16 C 0.60 9.48 7.78 -12.51 -0.10 9.38 16 17 O -0.52 -9.87 16.46 5.27 0.09 -9.79 16 18 C -0.02 -0.21 6.87 -83.78 -0.58 -0.79 16 19 C -0.23 -2.23 11.21 30.64 0.34 -1.88 16 20 S 0.45 3.28 23.38 -107.50 -2.51 0.77 16 21 N -0.29 -3.28 12.49 60.35 0.75 -2.53 16 22 N -0.21 -2.71 11.24 32.73 0.37 -2.34 16 23 C 0.14 3.10 6.10 -3.68 -0.02 3.08 16 24 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 25 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.41 5.41 8.19 -40.82 -0.33 5.07 16 32 H 0.21 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 1.37 7.93 -51.93 -0.41 0.95 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -32.27 302.37 -6.99 -39.26 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.96 Total: 1.50 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.08 Total: 3.76 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.95 Total: -57.05 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.51 Total: 0.77 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.27 -6.99 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008086625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.905 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds