Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47387 * 275.09025 * 3 2 1 5 5 H 1.48503 * 109.47268 * 35.09021 * 3 2 1 6 6 H 1.48502 * 109.47360 * 155.08792 * 3 2 1 7 7 C 1.38811 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99792 * 342.71009 * 7 2 1 9 9 N 1.36930 * 119.99930 * 162.70919 * 7 2 1 10 10 C 1.47422 * 125.65229 * 324.39992 * 9 7 2 11 11 C 1.54904 * 104.83448 * 155.90481 * 10 9 7 12 12 C 1.55152 * 101.58528 * 37.00904 * 11 10 9 13 13 C 1.47030 * 125.64566 * 144.43880 * 9 7 2 14 14 H 1.09003 * 110.00612 * 300.51117 * 13 9 7 15 15 C 1.52992 * 109.88256 * 61.60519 * 13 9 7 16 16 N 1.46496 * 109.47364 * 296.16371 * 15 13 9 17 17 C 1.34781 * 120.00081 * 173.22440 * 16 15 13 18 18 O 1.21625 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.47165 * 120.00029 * 180.02562 * 17 16 15 20 20 C 1.38247 * 128.47397 * 180.02562 * 19 17 16 21 21 N 1.31244 * 111.88733 * 179.97438 * 20 19 17 22 22 N 1.27340 * 120.03961 * 359.97438 * 21 20 19 23 23 S 1.56642 * 109.73990 * 359.69876 * 22 21 20 24 24 H 0.97001 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.09006 * 110.36115 * 274.74420 * 10 9 7 26 26 H 1.09001 * 110.36617 * 37.06430 * 10 9 7 27 27 H 1.09003 * 111.00365 * 278.93250 * 11 10 9 28 28 H 1.09008 * 111.00452 * 155.08470 * 11 10 9 29 29 H 1.08999 * 110.72662 * 206.13748 * 12 11 10 30 30 H 1.09002 * 110.72244 * 82.86024 * 12 11 10 31 31 H 1.08999 * 109.47378 * 56.16818 * 15 13 9 32 32 H 1.09004 * 109.46686 * 176.16211 * 15 13 9 33 33 H 0.97001 * 120.00068 * 353.22115 * 16 15 13 34 34 H 1.07989 * 124.06143 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3902 2.1085 -1.3945 5 1 1.5057 2.6192 0.8049 6 1 3.5975 1.4115 0.5897 7 6 2.0103 -1.2022 -0.0005 8 1 1.5068 -2.1165 0.2771 9 7 3.3332 -1.2288 -0.3530 10 6 3.9648 -0.3858 -1.3844 11 6 5.4608 -0.3269 -0.9870 12 6 5.6983 -1.7643 -0.4535 13 6 4.3589 -2.1036 0.2340 14 1 4.4357 -1.9211 1.3058 15 6 4.0002 -3.5690 -0.0198 16 7 2.7481 -3.8916 0.6689 17 6 2.1630 -5.0905 0.4771 18 8 2.6743 -5.9045 -0.2681 19 6 0.9048 -5.4144 1.1685 20 6 0.1615 -6.5781 1.1015 21 7 -0.9108 -6.5178 1.8559 22 7 -1.1543 -5.4683 2.5349 23 16 -0.0231 -4.4109 2.2984 24 1 -0.4850 0.8401 -0.0004 25 1 3.8512 -0.8411 -2.3682 26 1 3.5303 0.6139 -1.3756 27 1 5.6283 0.4130 -0.2043 28 1 6.0880 -0.1237 -1.8551 29 1 6.5160 -1.7781 0.2672 30 1 5.8954 -2.4530 -1.2751 31 1 3.8787 -3.7332 -1.0905 32 1 4.7978 -4.2089 0.3577 33 1 2.3401 -3.2424 1.2630 34 1 0.4311 -7.4343 0.5012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027769631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = 70.097268 kcal Electronic energy + Delta-G solvation = -20111.280451 eV Core-core repulsion = 16980.032320 eV Total energy + Delta-G solvation = -3131.248131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63540 -39.34859 -37.94290 -34.26383 -32.78131 -31.98497 -30.09400 -29.68909 -27.36851 -25.14409 -24.03101 -22.30894 -20.99998 -20.26672 -19.70751 -18.96008 -17.62976 -16.48398 -16.30761 -15.75064 -15.67984 -14.85494 -14.62601 -14.45320 -13.86808 -13.56872 -13.14756 -12.63546 -12.54855 -12.45833 -12.11079 -11.76548 -11.45428 -11.37254 -11.04610 -10.83282 -10.58519 -10.29956 -10.14096 -9.99385 -9.93528 -9.83145 -9.66455 -9.60855 -8.75714 -8.60851 -6.98560 -6.14610 -3.60366 -0.08093 1.01453 1.67053 2.11838 3.19728 3.22358 3.36306 3.38471 3.40713 4.17249 4.38743 4.78550 4.85514 4.99089 5.05218 5.21891 5.33205 5.42066 5.66396 5.72078 5.81516 5.95211 6.01342 6.15737 6.20170 6.28941 6.48226 6.68727 6.76356 6.76644 7.67272 7.73570 7.81652 8.14520 8.34605 8.63733 9.49109 10.08079 10.99208 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.006404 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.033690 B = 4371.531415 C = 5593.844390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.037 3.963 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.118 3.882 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.141 3.859 14 H 0.050 0.950 15 C 0.115 3.885 16 N -0.696 5.696 17 C 0.596 3.404 18 O -0.537 6.537 19 C -0.284 4.284 20 C 0.063 3.937 21 N -0.261 5.261 22 N -0.273 5.273 23 S 0.462 5.538 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 -5.466 3.099 9.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.164 4.164 3 Si 0.723 3.277 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.010 4.010 16 N -0.349 5.349 17 C 0.379 3.621 18 O -0.415 6.415 19 C -0.426 4.426 20 C -0.104 4.104 21 N -0.125 5.125 22 N -0.254 5.254 23 S 0.597 5.403 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.251 0.749 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.283 -5.192 3.877 9.026 hybrid contribution 0.870 0.576 -0.906 1.382 sum 7.153 -4.616 2.971 9.017 Atomic orbital electron populations 1.69794 1.05782 1.27082 1.51222 1.25418 0.95177 0.98057 0.97785 0.86674 0.80109 0.83905 0.77019 1.21563 1.23110 1.19265 1.18566 0.82259 0.93831 1.44364 0.89585 1.44676 1.05071 1.44093 1.38909 1.21890 0.90848 0.95174 0.92712 1.22782 0.97475 0.96694 1.00486 1.22482 0.96295 0.97070 1.00037 1.21298 0.89146 0.89144 0.96991 0.93209 1.22072 0.83910 0.97409 0.97628 1.46133 1.25956 1.15226 1.47536 1.16489 0.81698 0.82771 0.81127 1.90788 1.64142 1.48867 1.37744 1.28159 1.04954 1.00107 1.09346 1.24367 0.89022 0.98999 0.98039 1.70689 1.18275 1.15993 1.07501 1.78719 1.22725 1.02252 1.21713 1.83100 1.08478 1.22043 1.26661 0.92399 0.95003 0.94120 0.91524 0.91472 0.91274 0.91158 0.91064 0.92245 0.74875 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 13.97 55.49 0.78 -24.43 16 2 C 0.04 0.98 5.45 -17.43 -0.10 0.89 16 3 Si 0.89 20.97 24.78 -169.99 -4.21 16.76 16 4 H -0.29 -6.78 6.87 56.52 0.39 -6.39 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.05 6.99 56.52 0.40 -5.65 16 7 C -0.26 -6.46 9.51 -15.06 -0.14 -6.60 16 8 H 0.09 2.14 5.49 -52.48 -0.29 1.86 16 9 N -0.60 -12.71 2.68 -162.57 -0.44 -13.15 16 10 C 0.12 2.32 6.19 -2.53 -0.02 2.31 16 11 C -0.14 -2.09 7.08 -24.59 -0.17 -2.26 16 12 C -0.12 -1.66 6.48 -24.90 -0.16 -1.82 16 13 C 0.14 2.39 3.31 -66.95 -0.22 2.17 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.12 1.88 5.16 -4.05 -0.02 1.86 16 16 N -0.70 -11.93 4.33 -61.47 -0.27 -12.20 16 17 C 0.60 10.40 7.80 -12.63 -0.10 10.30 16 18 O -0.54 -10.45 16.96 5.26 0.09 -10.37 16 19 C -0.28 -4.46 6.81 -35.96 -0.25 -4.70 16 20 C 0.06 0.92 11.55 -17.80 -0.21 0.71 16 21 N -0.26 -4.14 11.54 30.36 0.35 -3.78 16 22 N -0.27 -4.40 12.51 60.35 0.75 -3.64 16 23 S 0.46 6.90 23.05 -107.50 -2.48 4.43 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.88 3.18 -51.93 -0.16 0.72 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 31 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 7.14 5.73 -40.82 -0.23 6.91 16 34 H 0.21 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -29.84 295.72 -5.98 -35.82 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.63 Total: 3.27 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.38 Total: 2.85 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 1.18 Total: -57.21 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.21 Total: 16.76 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -2.48 Total: 4.43 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.84 -5.98 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027769631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.912 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds