Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47387 * 275.09025 * 3 2 1 5 5 H 1.48503 * 109.47268 * 35.09021 * 3 2 1 6 6 H 1.48502 * 109.47360 * 155.08792 * 3 2 1 7 7 C 1.38811 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99792 * 342.71009 * 7 2 1 9 9 N 1.36930 * 119.99930 * 162.70919 * 7 2 1 10 10 C 1.47422 * 125.65229 * 324.39992 * 9 7 2 11 11 C 1.54904 * 104.83448 * 155.90481 * 10 9 7 12 12 C 1.55152 * 101.58528 * 37.00904 * 11 10 9 13 13 C 1.47030 * 125.64566 * 144.43880 * 9 7 2 14 14 H 1.09003 * 110.00612 * 300.51117 * 13 9 7 15 15 C 1.52992 * 109.88256 * 61.60519 * 13 9 7 16 16 N 1.46496 * 109.47364 * 296.16371 * 15 13 9 17 17 C 1.34781 * 120.00081 * 173.22440 * 16 15 13 18 18 O 1.21625 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.47165 * 120.00029 * 180.02562 * 17 16 15 20 20 C 1.38247 * 128.47397 * 180.02562 * 19 17 16 21 21 N 1.31244 * 111.88733 * 179.97438 * 20 19 17 22 22 N 1.27340 * 120.03961 * 359.97438 * 21 20 19 23 23 S 1.56642 * 109.73990 * 359.69876 * 22 21 20 24 24 H 0.97001 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.09006 * 110.36115 * 274.74420 * 10 9 7 26 26 H 1.09001 * 110.36617 * 37.06430 * 10 9 7 27 27 H 1.09003 * 111.00365 * 278.93250 * 11 10 9 28 28 H 1.09008 * 111.00452 * 155.08470 * 11 10 9 29 29 H 1.08999 * 110.72662 * 206.13748 * 12 11 10 30 30 H 1.09002 * 110.72244 * 82.86024 * 12 11 10 31 31 H 1.08999 * 109.47378 * 56.16818 * 15 13 9 32 32 H 1.09004 * 109.46686 * 176.16211 * 15 13 9 33 33 H 0.97001 * 120.00068 * 353.22115 * 16 15 13 34 34 H 1.07989 * 124.06143 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3902 2.1085 -1.3945 5 1 1.5057 2.6192 0.8049 6 1 3.5975 1.4115 0.5897 7 6 2.0103 -1.2022 -0.0005 8 1 1.5068 -2.1165 0.2771 9 7 3.3332 -1.2288 -0.3530 10 6 3.9648 -0.3858 -1.3844 11 6 5.4608 -0.3269 -0.9870 12 6 5.6983 -1.7643 -0.4535 13 6 4.3589 -2.1036 0.2340 14 1 4.4357 -1.9211 1.3058 15 6 4.0002 -3.5690 -0.0198 16 7 2.7481 -3.8916 0.6689 17 6 2.1630 -5.0905 0.4771 18 8 2.6743 -5.9045 -0.2681 19 6 0.9048 -5.4144 1.1685 20 6 0.1615 -6.5781 1.1015 21 7 -0.9108 -6.5178 1.8559 22 7 -1.1543 -5.4683 2.5349 23 16 -0.0231 -4.4109 2.2984 24 1 -0.4850 0.8401 -0.0004 25 1 3.8512 -0.8411 -2.3682 26 1 3.5303 0.6139 -1.3756 27 1 5.6283 0.4130 -0.2043 28 1 6.0880 -0.1237 -1.8551 29 1 6.5160 -1.7781 0.2672 30 1 5.8954 -2.4530 -1.2751 31 1 3.8787 -3.7332 -1.0905 32 1 4.7978 -4.2089 0.3577 33 1 2.3401 -3.2424 1.2630 34 1 0.4311 -7.4343 0.5012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027769631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = 48.983579 kcal Electronic energy + Delta-G solvation = -20112.196009 eV Core-core repulsion = 16980.032320 eV Total energy + Delta-G solvation = -3132.163689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87751 -40.73137 -39.36639 -35.65621 -34.60476 -33.23788 -31.73999 -31.03730 -28.64541 -26.60052 -25.63347 -23.65230 -22.32008 -21.65620 -21.07343 -20.22288 -19.17606 -18.01110 -17.86994 -17.10981 -16.98979 -16.39377 -15.93235 -15.74726 -15.30553 -15.06592 -14.81745 -14.20311 -13.86395 -13.81229 -13.61365 -13.03204 -12.96837 -12.93381 -12.61391 -12.23552 -12.05969 -11.72076 -11.47952 -11.43061 -11.34212 -11.17852 -11.15763 -10.89289 -10.65253 -10.04543 -8.73023 -8.13704 -5.53940 -1.33328 -0.20517 0.43671 0.89290 1.34069 1.44260 1.54097 1.85510 2.06723 2.46712 2.98179 3.09265 3.38528 3.64272 3.70997 3.94858 4.01842 4.16896 4.34552 4.51690 4.58187 4.70602 4.76962 4.89012 5.01891 5.05120 5.16744 5.33948 5.40202 5.52518 5.90903 6.21545 6.34315 6.55884 6.84531 6.97638 7.58713 8.25401 9.03166 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.006404 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.033690 B = 4371.531415 C = 5593.844390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.019 4.019 3 Si 0.943 3.057 4 H -0.293 1.293 5 H -0.317 1.317 6 H -0.251 1.251 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.137 3.863 14 H 0.056 0.944 15 C 0.118 3.882 16 N -0.699 5.699 17 C 0.598 3.402 18 O -0.559 6.559 19 C -0.301 4.301 20 C 0.076 3.924 21 N -0.273 5.273 22 N -0.287 5.287 23 S 0.485 5.515 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.019 0.981 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -5.981 3.210 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.216 4.216 3 Si 0.774 3.226 4 H -0.222 1.222 5 H -0.246 1.246 6 H -0.175 1.175 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.147 4.147 13 C 0.030 3.970 14 H 0.074 0.926 15 C -0.007 4.007 16 N -0.350 5.350 17 C 0.382 3.618 18 O -0.440 6.440 19 C -0.442 4.442 20 C -0.092 4.092 21 N -0.136 5.136 22 N -0.269 5.269 23 S 0.620 5.380 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.888 -5.715 3.996 11.297 hybrid contribution 0.103 0.650 -0.969 1.171 sum 8.991 -5.064 3.027 10.754 Atomic orbital electron populations 1.69907 1.07137 1.27126 1.54756 1.25959 0.95621 1.00738 0.99288 0.85842 0.79565 0.80793 0.76370 1.22151 1.24641 1.17507 1.18722 0.83944 0.93187 1.41076 0.90543 1.44869 1.04836 1.44905 1.39900 1.22053 0.93865 0.93590 0.92419 1.22752 0.94317 0.97716 1.01692 1.22519 0.95126 0.96085 1.01008 1.21550 0.89688 0.88223 0.97491 0.92624 1.22091 0.84322 0.97645 0.96650 1.46212 1.26328 1.15085 1.47409 1.16599 0.81914 0.82517 0.80765 1.90770 1.64931 1.49458 1.38819 1.28073 1.04949 1.00917 1.10261 1.24770 0.87982 0.99261 0.97165 1.70722 1.18864 1.16037 1.07956 1.78656 1.23362 1.02705 1.22151 1.83030 1.07763 1.21302 1.25949 0.93048 0.95304 0.96264 0.91690 0.88483 0.87953 0.89678 0.92817 0.89488 0.75120 0.74664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.50 13.97 21.65 0.30 -54.19 16 2 C -0.02 -1.02 5.45 84.86 0.46 -0.56 16 3 Si 0.94 43.69 24.78 68.60 1.70 45.39 16 4 H -0.29 -13.63 6.87 99.48 0.68 -12.95 16 5 H -0.32 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.25 -10.73 6.99 99.48 0.70 -10.04 16 7 C -0.24 -11.78 9.51 84.03 0.80 -10.98 16 8 H 0.08 3.83 5.49 -2.91 -0.02 3.82 16 9 N -0.62 -25.20 2.68 -668.25 -1.79 -26.99 16 10 C 0.10 3.92 6.19 86.85 0.54 4.46 16 11 C -0.13 -3.37 7.08 31.98 0.23 -3.15 16 12 C -0.11 -2.50 6.48 31.78 0.21 -2.30 16 13 C 0.14 4.21 3.31 45.34 0.15 4.36 16 14 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 15 C 0.12 3.58 5.16 86.38 0.45 4.02 16 16 N -0.70 -23.12 4.33 -466.64 -2.02 -25.15 16 17 C 0.60 20.27 7.80 86.59 0.68 20.94 16 18 O -0.56 -21.11 16.96 -4.11 -0.07 -21.18 16 19 C -0.30 -9.18 6.81 24.62 0.17 -9.01 16 20 C 0.08 2.11 11.55 84.78 0.98 3.09 16 21 N -0.27 -8.39 11.54 -57.87 -0.67 -9.06 16 22 N -0.29 -9.12 12.51 37.02 0.46 -8.65 16 23 S 0.48 14.29 23.05 -56.49 -1.30 12.99 16 24 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.02 0.81 3.18 -2.39 -0.01 0.80 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 28 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 31 H 0.05 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.41 13.91 5.73 -92.71 -0.53 13.38 16 34 H 0.24 5.10 8.06 -2.92 -0.02 5.08 16 Total: -1.00 -64.43 295.72 1.84 -62.59 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.58 Total: 13.36 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 4.65 Total: 10.89 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -3.72 Total: -124.04 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.07 Total: -21.18 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.70 Total: 45.39 kcal Atomic # 16 Polarization: 14.29 SS G_CDS: -1.30 Total: 12.99 kcal Total: -64.43 1.84 -62.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027769631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.573 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds