Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47317 * 269.99890 * 3 2 1 5 5 H 1.48492 * 109.47226 * 29.99963 * 3 2 1 6 6 H 1.48499 * 109.47358 * 150.00072 * 3 2 1 7 7 C 1.38815 * 119.99421 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99606 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64676 * 345.82989 * 9 7 2 11 11 C 1.54916 * 104.83080 * 204.14643 * 10 9 7 12 12 C 1.55152 * 101.57827 * 322.99180 * 11 10 9 13 13 C 1.47015 * 125.64836 * 165.85056 * 9 7 2 14 14 H 1.09006 * 110.01087 * 59.43136 * 13 9 7 15 15 C 1.53007 * 109.88482 * 298.34154 * 13 9 7 16 16 N 1.46499 * 109.47323 * 176.74137 * 15 13 9 17 17 C 1.34774 * 119.99748 * 174.96281 * 16 15 13 18 18 O 1.21620 * 120.00519 * 0.02562 * 17 16 15 19 19 C 1.47172 * 119.99899 * 179.72078 * 17 16 15 20 20 C 1.38240 * 128.47831 * 179.70491 * 19 17 16 21 21 N 1.31241 * 111.89387 * 179.81987 * 20 19 17 22 22 N 1.27340 * 120.03367 * 0.52772 * 21 20 19 23 23 S 1.56646 * 109.73939 * 359.69944 * 22 21 20 24 24 H 0.97003 * 119.99690 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.36881 * 85.30915 * 10 9 7 26 26 H 1.08996 * 110.46124 * 323.02753 * 10 9 7 27 27 H 1.08992 * 111.00419 * 204.91419 * 11 10 9 28 28 H 1.08995 * 111.00181 * 81.06295 * 11 10 9 29 29 H 1.08999 * 110.72121 * 277.13489 * 12 11 10 30 30 H 1.09006 * 110.72251 * 153.86814 * 12 11 10 31 31 H 1.09004 * 109.47074 * 56.73946 * 15 13 9 32 32 H 1.09002 * 109.46926 * 296.74215 * 15 13 9 33 33 H 0.96994 * 120.00001 * 354.96645 * 16 15 13 34 34 H 1.08003 * 124.05703 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1100 -2.5514 0.2933 11 6 -0.2527 -4.0182 0.7709 12 6 0.7653 -4.7450 -0.1471 13 6 1.9000 -3.7093 -0.2931 14 1 2.6994 -3.9331 0.4134 15 6 2.4467 -3.7343 -1.7220 16 7 3.0859 -5.0274 -1.9778 17 6 3.5519 -5.3169 -3.2088 18 8 3.4421 -4.5045 -4.1073 19 6 4.1995 -6.6134 -3.4644 20 6 4.7302 -7.0914 -4.6480 21 7 5.2345 -8.2949 -4.5075 22 7 5.1846 -8.8789 -3.3770 23 16 4.4828 -7.9476 -2.3310 24 1 -0.4850 0.8401 -0.0004 25 1 -0.7026 -2.3861 -0.6065 26 1 -0.4182 -1.8643 1.0812 27 1 -1.2641 -4.3874 0.6020 28 1 0.0274 -4.1165 1.8196 29 1 0.3197 -4.9680 -1.1165 30 1 1.1323 -5.6547 0.3282 31 1 3.1790 -2.9363 -1.8448 32 1 1.6281 -3.5878 -2.4267 33 1 3.1738 -5.6751 -1.2612 34 1 4.7327 -6.5393 -5.5762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027769632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = 62.236716 kcal Electronic energy + Delta-G solvation = -19495.786266 eV Core-core repulsion = 16364.197276 eV Total energy + Delta-G solvation = -3131.588990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04847 -39.54503 -37.71303 -34.53230 -32.60675 -32.32200 -29.86330 -29.02536 -27.54752 -25.07378 -24.20792 -22.57032 -20.81039 -20.27388 -19.71663 -19.32028 -17.65047 -16.70466 -16.13964 -16.05849 -15.32790 -14.95709 -14.78066 -14.47388 -13.95685 -13.66892 -13.19765 -12.93611 -12.27490 -12.15267 -11.97649 -11.86451 -11.44017 -11.00912 -10.85363 -10.56681 -10.38513 -10.33578 -10.28075 -10.13462 -10.08944 -9.98145 -9.90091 -9.76706 -8.93901 -8.66126 -6.92936 -5.83754 -3.21059 -0.50985 0.54836 1.21646 1.74396 2.92402 2.98360 3.36197 3.41911 3.42761 3.77893 4.41522 4.46069 4.63266 5.22337 5.29498 5.33849 5.40597 5.53140 5.71323 5.91949 6.01129 6.13968 6.34075 6.36423 6.43909 6.58351 6.66376 6.91852 7.31217 7.43513 7.44907 7.53945 7.72613 8.04135 8.18196 9.09805 9.70357 10.36700 11.27924 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.004045 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.402386 B = 6920.676433 C = 7613.601745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.001 3.999 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.129 4.129 13 C 0.151 3.849 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.710 5.710 17 C 0.592 3.408 18 O -0.516 6.516 19 C -0.274 4.274 20 C 0.068 3.932 21 N -0.252 5.252 22 N -0.261 5.261 23 S 0.417 5.583 24 H 0.255 0.745 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.395 0.605 34 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -15.094 -1.712 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.167 4.167 13 C 0.042 3.958 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.361 5.361 17 C 0.373 3.627 18 O -0.392 6.392 19 C -0.416 4.416 20 C -0.099 4.099 21 N -0.116 5.116 22 N -0.242 5.242 23 S 0.551 5.449 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.229 0.771 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.508 -15.898 -1.461 16.888 hybrid contribution 0.231 1.759 -0.747 1.925 sum 5.739 -14.139 -2.208 15.418 Atomic orbital electron populations 1.69935 1.05055 1.25438 1.55537 1.24913 0.95674 0.97917 1.01157 0.86144 0.78724 0.83274 0.77760 1.21330 1.21599 1.20540 1.18984 0.90418 0.82131 1.45107 0.90575 1.44486 1.06167 1.00817 1.79670 1.21478 0.84627 0.90281 0.98952 1.23006 0.97535 0.99539 0.98626 1.22638 0.97145 0.96999 0.99881 1.21146 0.94613 0.88319 0.91679 0.94305 1.22460 0.97441 0.81867 0.99996 1.46083 1.59560 1.20495 1.09958 1.16546 0.78798 0.83537 0.83774 1.90877 1.56736 1.47666 1.43911 1.28274 1.11571 1.03123 0.98609 1.24481 0.94664 0.90600 1.00123 1.70696 1.18273 1.09153 1.13507 1.78872 1.19036 1.25443 1.00888 1.82612 1.40182 1.00934 1.21150 0.93511 0.95567 0.90783 0.92260 0.92212 0.91755 0.92278 0.90808 0.90938 0.77123 0.76751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.78 10.56 55.49 0.59 -25.20 16 2 C 0.00 0.03 5.47 -17.43 -0.10 -0.07 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.24 -6.25 9.75 -15.06 -0.15 -6.40 16 8 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.59 -13.81 3.13 -162.57 -0.51 -14.32 16 10 C 0.17 3.89 5.42 -2.53 -0.01 3.87 16 11 C -0.15 -2.54 7.09 -24.58 -0.17 -2.71 16 12 C -0.13 -1.95 6.14 -24.90 -0.15 -2.10 16 13 C 0.15 2.74 3.21 -66.96 -0.21 2.52 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 1.87 5.08 -4.04 -0.02 1.85 16 16 N -0.71 -9.48 5.34 -61.46 -0.33 -9.80 16 17 C 0.59 8.35 7.80 -12.63 -0.10 8.26 16 18 O -0.52 -9.31 16.98 5.26 0.09 -9.22 16 19 C -0.27 -3.05 6.81 -35.96 -0.25 -3.30 16 20 C 0.07 0.73 11.55 -17.80 -0.21 0.52 16 21 N -0.25 -2.98 11.54 30.36 0.35 -2.63 16 22 N -0.26 -2.95 12.51 60.35 0.75 -2.20 16 23 S 0.42 3.62 23.05 -107.50 -2.48 1.15 16 24 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.96 7.80 -51.93 -0.40 0.56 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.47 7.90 -51.93 -0.41 1.06 16 32 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 33 H 0.40 4.05 7.79 -40.82 -0.32 3.73 16 34 H 0.22 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -30.98 305.56 -7.31 -38.29 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.99 Total: 0.47 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.37 Total: 2.45 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.85 Total: -54.15 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.48 Total: 1.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.98 -7.31 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027769632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.528 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds