Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47317 * 269.99890 * 3 2 1 5 5 H 1.48492 * 109.47226 * 29.99963 * 3 2 1 6 6 H 1.48499 * 109.47358 * 150.00072 * 3 2 1 7 7 C 1.38815 * 119.99421 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99606 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64676 * 345.82989 * 9 7 2 11 11 C 1.54916 * 104.83080 * 204.14643 * 10 9 7 12 12 C 1.55152 * 101.57827 * 322.99180 * 11 10 9 13 13 C 1.47015 * 125.64836 * 165.85056 * 9 7 2 14 14 H 1.09006 * 110.01087 * 59.43136 * 13 9 7 15 15 C 1.53007 * 109.88482 * 298.34154 * 13 9 7 16 16 N 1.46499 * 109.47323 * 176.74137 * 15 13 9 17 17 C 1.34774 * 119.99748 * 174.96281 * 16 15 13 18 18 O 1.21620 * 120.00519 * 0.02562 * 17 16 15 19 19 C 1.47172 * 119.99899 * 179.72078 * 17 16 15 20 20 C 1.38240 * 128.47831 * 179.70491 * 19 17 16 21 21 N 1.31241 * 111.89387 * 179.81987 * 20 19 17 22 22 N 1.27340 * 120.03367 * 0.52772 * 21 20 19 23 23 S 1.56646 * 109.73939 * 359.69944 * 22 21 20 24 24 H 0.97003 * 119.99690 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.36881 * 85.30915 * 10 9 7 26 26 H 1.08996 * 110.46124 * 323.02753 * 10 9 7 27 27 H 1.08992 * 111.00419 * 204.91419 * 11 10 9 28 28 H 1.08995 * 111.00181 * 81.06295 * 11 10 9 29 29 H 1.08999 * 110.72121 * 277.13489 * 12 11 10 30 30 H 1.09006 * 110.72251 * 153.86814 * 12 11 10 31 31 H 1.09004 * 109.47074 * 56.73946 * 15 13 9 32 32 H 1.09002 * 109.46926 * 296.74215 * 15 13 9 33 33 H 0.96994 * 120.00001 * 354.96645 * 16 15 13 34 34 H 1.08003 * 124.05703 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1100 -2.5514 0.2933 11 6 -0.2527 -4.0182 0.7709 12 6 0.7653 -4.7450 -0.1471 13 6 1.9000 -3.7093 -0.2931 14 1 2.6994 -3.9331 0.4134 15 6 2.4467 -3.7343 -1.7220 16 7 3.0859 -5.0274 -1.9778 17 6 3.5519 -5.3169 -3.2088 18 8 3.4421 -4.5045 -4.1073 19 6 4.1995 -6.6134 -3.4644 20 6 4.7302 -7.0914 -4.6480 21 7 5.2345 -8.2949 -4.5075 22 7 5.1846 -8.8789 -3.3770 23 16 4.4828 -7.9476 -2.3310 24 1 -0.4850 0.8401 -0.0004 25 1 -0.7026 -2.3861 -0.6065 26 1 -0.4182 -1.8643 1.0812 27 1 -1.2641 -4.3874 0.6020 28 1 0.0274 -4.1165 1.8196 29 1 0.3197 -4.9680 -1.1165 30 1 1.1323 -5.6547 0.3282 31 1 3.1790 -2.9363 -1.8448 32 1 1.6281 -3.5878 -2.4267 33 1 3.1738 -5.6751 -1.2612 34 1 4.7327 -6.5393 -5.5762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027769632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = 39.766929 kcal Electronic energy + Delta-G solvation = -19496.760629 eV Core-core repulsion = 16364.197276 eV Total energy + Delta-G solvation = -3132.563353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91762 -40.75802 -39.23846 -35.90963 -34.41491 -33.26097 -31.44869 -30.56810 -28.56643 -26.71276 -25.75894 -23.65825 -22.09382 -21.68326 -21.12442 -20.27016 -18.96548 -18.29222 -17.41425 -17.04946 -16.72458 -16.32925 -16.10983 -15.67863 -15.57674 -14.96292 -14.66617 -13.95931 -13.83894 -13.64253 -13.41291 -13.01886 -12.99465 -12.82850 -12.68359 -12.00013 -11.87213 -11.72742 -11.51286 -11.45738 -11.37114 -11.23450 -11.18507 -10.91799 -10.67020 -10.21489 -8.85015 -7.87113 -5.24527 -1.36486 -0.25366 0.41866 0.86956 1.46270 1.48498 1.55748 1.83246 1.85054 2.50305 2.94666 3.33035 3.55164 3.64017 3.80541 3.98043 3.99870 4.29274 4.45898 4.55664 4.58324 4.75095 4.95277 5.02680 5.12843 5.18302 5.29514 5.49985 5.56453 5.69227 5.81217 6.23683 6.29641 6.55751 6.95618 7.10590 7.77958 8.43128 9.23602 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.004045 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.402386 B = 6920.676433 C = 7613.601745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.117 4.117 13 C 0.146 3.854 14 H 0.058 0.942 15 C 0.127 3.873 16 N -0.696 5.696 17 C 0.599 3.401 18 O -0.562 6.562 19 C -0.302 4.302 20 C 0.076 3.924 21 N -0.275 5.275 22 N -0.287 5.287 23 S 0.518 5.482 24 H 0.247 0.753 25 H -0.009 1.009 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.414 0.586 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -17.770 -0.701 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.334 5.334 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.039 3.961 14 H 0.075 0.925 15 C 0.001 3.999 16 N -0.348 5.348 17 C 0.383 3.617 18 O -0.441 6.441 19 C -0.443 4.443 20 C -0.092 4.092 21 N -0.138 5.138 22 N -0.269 5.269 23 S 0.653 5.347 24 H 0.056 0.944 25 H 0.009 0.991 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.252 0.748 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.676 -18.652 -0.426 19.815 hybrid contribution -0.080 2.482 -1.002 2.678 sum 6.595 -16.170 -1.427 17.522 Atomic orbital electron populations 1.70138 1.06301 1.25330 1.57549 1.25644 0.96432 1.00916 1.02196 0.85220 0.78008 0.79721 0.77267 1.21831 1.22082 1.19139 1.19322 0.90853 0.83524 1.43160 0.90236 1.44739 1.06562 1.02053 1.80092 1.21284 0.84066 0.93602 0.96346 1.22868 0.99644 0.95234 0.99478 1.22661 0.95129 0.97522 1.00109 1.21383 0.96235 0.86717 0.91796 0.92463 1.21884 0.95934 0.83033 0.99081 1.45712 1.59066 1.19380 1.10621 1.16758 0.77906 0.84051 0.83034 1.90859 1.58439 1.49535 1.45257 1.27883 1.13119 1.02973 1.00336 1.24718 0.93537 0.90280 1.00616 1.70786 1.19480 1.09561 1.13957 1.78630 1.19857 1.26735 1.01629 1.82205 1.36806 0.97709 1.18029 0.94381 0.99071 0.94593 0.90044 0.91052 0.91472 0.87279 0.93759 0.93549 0.74846 0.75707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.65 10.56 21.65 0.23 -55.42 16 2 C -0.06 -3.22 5.47 84.86 0.46 -2.75 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -12.76 9.75 84.03 0.82 -11.94 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -28.87 3.13 -668.25 -2.09 -30.96 16 10 C 0.17 7.96 5.42 86.86 0.47 8.43 16 11 C -0.13 -4.25 7.09 31.99 0.23 -4.02 16 12 C -0.12 -3.10 6.14 31.78 0.20 -2.90 16 13 C 0.15 5.02 3.21 45.34 0.15 5.16 16 14 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 15 C 0.13 4.36 5.08 86.38 0.44 4.80 16 16 N -0.70 -17.03 5.34 -466.62 -2.49 -19.52 16 17 C 0.60 16.08 7.80 86.59 0.68 16.75 16 18 O -0.56 -20.35 16.98 -4.09 -0.07 -20.42 16 19 C -0.30 -6.03 6.81 24.62 0.17 -5.86 16 20 C 0.08 1.52 11.55 84.78 0.98 2.49 16 21 N -0.27 -5.98 11.54 -57.87 -0.67 -6.65 16 22 N -0.29 -5.69 12.51 37.02 0.46 -5.23 16 23 S 0.52 7.05 23.05 -56.49 -1.30 5.75 16 24 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 25 H -0.01 -0.46 8.07 -2.39 -0.02 -0.48 16 26 H 0.04 1.90 6.90 -2.39 -0.02 1.89 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 30 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.04 1.79 7.90 -2.38 -0.02 1.77 16 32 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 33 H 0.41 6.81 7.79 -92.71 -0.72 6.09 16 34 H 0.23 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -71.12 305.56 1.09 -70.02 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.41 Total: 5.14 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 4.58 Total: 10.17 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -4.56 Total: -117.79 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.07 Total: -20.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.30 Total: 5.75 kcal Total: -71.12 1.09 -70.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027769632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.788 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds