Wall clock time and date at job start Tue Mar 31 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48496 * 109.47538 * 270.00454 * 3 2 1 5 5 H 1.48502 * 109.47120 * 30.00805 * 3 2 1 6 6 H 1.48500 * 109.47069 * 150.00315 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00290 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65173 * 14.65908 * 9 7 2 11 11 C 1.54911 * 104.92922 * 155.83959 * 10 9 7 12 12 C 1.55442 * 101.44776 * 37.00640 * 11 10 9 13 13 C 1.47022 * 125.64936 * 194.69117 * 9 7 2 14 14 H 1.09000 * 109.87682 * 300.45478 * 13 9 7 15 15 C 1.52995 * 109.88250 * 61.61637 * 13 9 7 16 16 N 1.46504 * 109.47162 * 183.75215 * 15 13 9 17 17 C 1.34776 * 120.00076 * 185.66222 * 16 15 13 18 18 O 1.21569 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.47751 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.39355 * 124.11652 * 179.97438 * 19 17 16 21 21 N 1.30088 * 112.14387 * 179.97438 * 20 19 17 22 22 S 1.55922 * 108.75605 * 0.02562 * 21 20 19 23 23 N 1.31486 * 124.11574 * 359.69668 * 19 17 16 24 24 H 0.96995 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.08994 * 110.36886 * 274.73760 * 10 9 7 26 26 H 1.09004 * 110.36338 * 36.94675 * 10 9 7 27 27 H 1.08996 * 111.00122 * 155.14411 * 11 10 9 28 28 H 1.09003 * 111.00200 * 278.99546 * 11 10 9 29 29 H 1.09007 * 110.70398 * 206.14176 * 12 11 10 30 30 H 1.09003 * 110.70476 * 82.89152 * 12 11 10 31 31 H 1.09008 * 109.47209 * 303.74906 * 15 13 9 32 32 H 1.08996 * 109.47315 * 63.75037 * 15 13 9 33 33 H 0.97000 * 120.00053 * 5.65463 * 16 15 13 34 34 H 1.08001 * 123.92497 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1078 -2.5527 -0.3032 11 6 -0.2496 -4.0208 -0.7768 12 6 0.7644 -4.7442 0.1530 13 6 1.8982 -3.7080 0.3019 14 1 2.7010 -3.9334 -0.4000 15 6 2.4351 -3.7264 1.7345 16 7 3.0828 -5.0141 1.9967 17 6 3.5313 -5.3031 3.2343 18 8 3.3988 -4.4952 4.1330 19 6 4.1841 -6.6020 3.4989 20 6 4.6789 -6.9890 4.7428 21 7 5.2056 -8.1781 4.7126 22 16 5.0866 -8.7425 3.2640 23 7 4.3641 -7.5354 2.5906 24 1 -0.4850 0.8400 0.0004 25 1 -0.7064 -2.3832 0.5918 26 1 -0.4093 -1.8676 -1.0956 27 1 -1.2630 -4.3876 -0.6137 28 1 0.0377 -4.1232 -1.8233 29 1 1.1344 -5.6561 -0.3158 30 1 0.3122 -4.9628 1.1204 31 1 3.1603 -2.9225 1.8611 32 1 1.6107 -3.5854 2.4333 33 1 3.1888 -5.6586 1.2796 34 1 4.6306 -6.3734 5.6289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027772173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:36 Heat of formation + Delta-G solvation = 47.800206 kcal Electronic energy + Delta-G solvation = -19580.440229 eV Core-core repulsion = 16448.225225 eV Total energy + Delta-G solvation = -3132.215004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23052 -39.04366 -37.57491 -34.53343 -33.64238 -32.47921 -29.76271 -28.90155 -27.44212 -25.00349 -24.16472 -22.58857 -20.50996 -20.13672 -19.58717 -19.51566 -17.78551 -16.64291 -16.24378 -15.82745 -15.51290 -14.86762 -14.69780 -14.35950 -13.87389 -13.44563 -13.07800 -12.48591 -12.10924 -11.90705 -11.78390 -11.65399 -11.42133 -11.33703 -11.25748 -10.96638 -10.79748 -10.28720 -10.17504 -10.07646 -9.90171 -9.81997 -9.71593 -9.43530 -8.76065 -8.59829 -6.86692 -5.78808 -3.15841 0.21063 1.15817 1.39572 1.39853 3.16199 3.20573 3.39243 3.45107 3.46657 4.30758 4.47152 4.79799 4.91703 5.26517 5.30875 5.38485 5.48071 5.60179 5.79633 6.01210 6.07890 6.19591 6.23198 6.43375 6.48730 6.55233 6.65913 6.75526 7.01457 7.49573 7.58800 7.63992 7.77395 8.21132 8.25593 9.15168 9.75652 10.42880 11.33075 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.003913 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.875625 B = 7154.510415 C = 7852.057572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.698 5.698 17 C 0.594 3.406 18 O -0.525 6.525 19 C 0.019 3.981 20 C 0.089 3.911 21 N -0.579 5.579 22 S 0.705 5.295 23 N -0.546 5.546 24 H 0.254 0.746 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.405 0.595 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -17.694 3.783 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.348 5.348 17 C 0.373 3.627 18 O -0.400 6.400 19 C -0.156 4.156 20 C -0.105 4.105 21 N -0.419 5.419 22 S 0.747 5.253 23 N -0.395 5.395 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.381 -18.670 3.616 20.399 hybrid contribution -0.013 2.160 0.511 2.220 sum 7.368 -16.510 4.127 18.545 Atomic orbital electron populations 1.69936 1.05044 1.25375 1.55699 1.24919 0.95671 0.97887 1.01253 0.86143 0.78825 0.83358 0.77579 1.21523 1.21563 1.20488 1.18990 0.90422 0.82151 1.44871 0.90602 1.44494 1.06414 1.00977 1.79334 1.21462 0.84729 0.90223 0.98890 1.23056 0.97533 0.99576 0.98552 1.22661 0.97055 0.96996 0.99753 1.21132 0.94643 0.88189 0.91720 0.94354 1.22416 0.97270 0.82377 0.99744 1.46007 1.58265 1.20584 1.09971 1.16806 0.78868 0.83180 0.83832 1.90851 1.57088 1.47696 1.44395 1.22747 1.05468 0.97348 0.90068 1.23820 0.95577 0.91217 0.99922 1.72269 1.25679 1.15977 1.28018 1.79030 1.36630 1.20058 0.89591 1.72484 1.20630 1.08748 1.37659 0.93563 0.95548 0.90922 0.92294 0.92276 0.92324 0.91833 0.90938 0.91058 0.76035 0.76879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.34 10.57 55.49 0.59 -25.75 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.09 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.38 9.73 -15.06 -0.15 -6.52 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.39 3.13 -162.58 -0.51 -14.90 16 10 C 0.17 4.04 5.41 -2.53 -0.01 4.03 16 11 C -0.15 -2.69 7.11 -24.43 -0.17 -2.87 16 12 C -0.13 -2.11 6.18 -24.75 -0.15 -2.26 16 13 C 0.15 2.96 3.20 -66.96 -0.21 2.74 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C 0.11 2.01 5.09 -4.04 -0.02 1.99 16 16 N -0.70 -10.73 5.34 -61.28 -0.33 -11.06 16 17 C 0.59 9.28 7.82 -12.37 -0.10 9.19 16 18 O -0.52 -9.80 16.80 5.31 0.09 -9.71 16 19 C 0.02 0.25 6.81 -83.71 -0.57 -0.32 16 20 C 0.09 0.98 11.22 -17.87 -0.20 0.78 16 21 N -0.58 -6.06 11.41 19.42 0.22 -5.84 16 22 S 0.71 5.89 23.69 -107.50 -2.55 3.34 16 23 N -0.55 -6.13 11.00 23.17 0.25 -5.87 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 26 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 31 H 0.07 1.53 7.88 -51.92 -0.41 1.12 16 32 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 33 H 0.40 5.43 7.97 -40.82 -0.33 5.11 16 34 H 0.21 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -31.09 304.29 -8.35 -39.43 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.99 Total: 2.27 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.68 Total: 6.67 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.23 Total: -63.42 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -2.55 Total: 3.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.09 -8.35 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027772173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.233 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds