Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47146 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47562 * 240.00071 * 3 2 1 6 6 H 1.48499 * 109.47079 * 119.99721 * 3 2 1 7 7 C 1.38812 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00266 * 2.77474 * 7 2 1 9 9 N 1.36939 * 120.00034 * 182.78129 * 7 2 1 10 10 C 1.47425 * 125.64380 * 326.54225 * 9 7 2 11 11 C 1.54693 * 104.93768 * 204.07096 * 10 9 7 12 12 C 1.55155 * 101.67753 * 323.27793 * 11 10 9 13 13 C 1.47016 * 125.65006 * 146.84655 * 9 7 2 14 14 H 1.08994 * 109.88436 * 59.48888 * 13 9 7 15 15 C 1.53001 * 109.88603 * 298.32207 * 13 9 7 16 16 N 1.46501 * 109.46909 * 59.32775 * 15 13 9 17 17 C 1.34779 * 120.00287 * 186.18023 * 16 15 13 18 18 O 1.21570 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.47742 * 120.00439 * 180.02562 * 17 16 15 20 20 C 1.39346 * 124.11935 * 179.72399 * 19 17 16 21 21 N 1.30092 * 112.14976 * 179.84477 * 20 19 17 22 22 S 1.55930 * 108.75100 * 0.40072 * 21 20 19 23 23 N 1.31493 * 124.11553 * 0.02562 * 19 17 16 24 24 H 0.96997 * 120.00117 * 174.95748 * 1 2 3 25 25 H 1.08995 * 110.37002 * 323.00215 * 10 9 7 26 26 H 1.08998 * 110.36784 * 85.32908 * 10 9 7 27 27 H 1.09007 * 111.10019 * 205.10721 * 11 10 9 28 28 H 1.08996 * 110.81684 * 81.32201 * 11 10 9 29 29 H 1.09003 * 110.72324 * 276.96973 * 12 11 10 30 30 H 1.09001 * 110.71622 * 153.70132 * 12 11 10 31 31 H 1.08995 * 109.47463 * 179.32556 * 15 13 9 32 32 H 1.08998 * 109.47002 * 299.32965 * 15 13 9 33 33 H 0.97000 * 119.99831 * 6.17592 * 16 15 13 34 34 H 1.08008 * 123.92809 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 1.4712 -2.1369 -0.0462 9 7 3.3784 -1.2030 0.0570 10 6 4.2641 -0.1880 -0.5419 11 6 5.6150 -0.9116 -0.7521 12 6 5.6825 -1.8215 0.5028 13 6 4.2075 -2.2195 0.7209 14 1 4.0185 -3.1980 0.2795 15 6 3.8929 -2.2511 2.2178 16 7 2.4747 -2.5628 2.4123 17 6 1.9390 -2.5217 3.6484 18 8 2.6328 -2.2265 4.6020 19 6 0.5089 -2.8365 3.8446 20 6 -0.1311 -2.8259 5.0824 21 7 -1.3909 -3.1354 4.9858 22 16 -1.7240 -3.4197 3.4893 23 7 -0.3137 -3.1664 2.8732 24 1 -0.4850 -0.8368 -0.0738 25 1 3.8619 0.1505 -1.4968 26 1 4.3896 0.6547 0.1380 27 1 6.4424 -0.2021 -0.7652 28 1 5.5979 -1.5063 -1.6654 29 1 6.0633 -1.2676 1.3609 30 1 6.2948 -2.7020 0.3083 31 1 4.5023 -3.0148 2.7011 32 1 4.1146 -1.2782 2.6563 33 1 1.9212 -2.7986 1.6515 34 1 0.3609 -2.5856 6.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027772175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = 50.795182 kcal Electronic energy + Delta-G solvation = -20448.838803 eV Core-core repulsion = 17316.753671 eV Total energy + Delta-G solvation = -3132.085132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78959 -38.83240 -37.74130 -34.13134 -33.21256 -32.79074 -29.88745 -29.55252 -27.21358 -25.00216 -23.64812 -22.29567 -21.08478 -19.87529 -19.35831 -19.10553 -17.78215 -16.94384 -15.90759 -15.62633 -15.38750 -15.04509 -14.92114 -14.23584 -13.51313 -13.41224 -13.25246 -12.74774 -12.35697 -12.03777 -11.74683 -11.38697 -11.21489 -11.11141 -11.00059 -10.93353 -10.79434 -10.71075 -10.52023 -9.94431 -9.65954 -9.37579 -9.21574 -9.01253 -8.68843 -8.35227 -6.98212 -6.37254 -3.47356 0.69157 1.62128 1.80330 1.83990 3.37242 3.46753 3.51270 3.65161 3.70996 4.54370 4.73885 4.93295 5.13496 5.24529 5.31211 5.38816 5.45533 5.52692 5.61168 5.79238 5.88650 6.06049 6.08486 6.22890 6.26809 6.36083 6.60504 6.62344 6.73242 6.80553 7.02683 7.80665 8.12695 8.28565 8.65975 8.93646 9.45680 10.21883 11.08099 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006606 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.728288 B = 4237.360634 C = 5094.556554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 1.068 2.932 4 H -0.302 1.302 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.326 4.326 8 H 0.069 0.931 9 N -0.604 5.604 10 C 0.099 3.901 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.145 3.855 14 H 0.043 0.957 15 C 0.115 3.885 16 N -0.672 5.672 17 C 0.596 3.404 18 O -0.550 6.550 19 C 0.021 3.979 20 C 0.084 3.916 21 N -0.585 5.585 22 S 0.701 5.299 23 N -0.525 5.525 24 H 0.264 0.736 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.420 0.580 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -6.829 3.962 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.204 4.204 3 Si 0.900 3.100 4 H -0.230 1.230 5 H -0.211 1.211 6 H -0.219 1.219 7 C -0.454 4.454 8 H 0.086 0.914 9 N -0.330 5.330 10 C -0.025 4.025 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.061 0.939 15 C -0.011 4.011 16 N -0.323 5.323 17 C 0.376 3.624 18 O -0.429 6.429 19 C -0.155 4.155 20 C -0.111 4.111 21 N -0.426 5.426 22 S 0.743 5.257 23 N -0.374 5.374 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.261 0.739 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.971 -5.547 3.735 6.972 hybrid contribution 1.414 -1.127 0.386 1.849 sum 3.385 -6.674 4.121 8.543 Atomic orbital electron populations 1.70889 1.05852 1.29878 1.48997 1.26167 0.96411 1.01414 0.96425 0.83839 0.73666 0.75853 0.76592 1.22960 1.21136 1.21943 1.19811 0.78875 0.94542 1.52126 0.91368 1.44775 1.02061 1.26087 1.60118 1.22249 0.90239 0.92923 0.97099 1.22689 0.97922 0.98644 0.97659 1.22520 0.95643 0.99520 0.98484 1.21317 0.90684 0.94270 0.89983 0.93884 1.22019 0.80426 1.00214 0.98442 1.45954 1.12026 1.65835 1.08519 1.16773 0.83172 0.78330 0.84164 1.90750 1.60467 1.50604 1.41058 1.22618 0.97930 1.06189 0.88740 1.23717 0.87658 0.99147 1.00541 1.72226 1.20211 1.23195 1.26966 1.78980 1.12250 1.45932 0.88531 1.72558 1.09125 1.18922 1.36792 0.92595 0.92019 0.95638 0.91687 0.91492 0.91252 0.91424 0.92685 0.91514 0.73924 0.77272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 13.70 55.49 0.76 -26.55 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 3 Si 1.07 26.32 24.71 -169.99 -4.20 22.12 16 4 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 5 H -0.28 -6.37 5.55 56.52 0.31 -6.06 16 6 H -0.29 -7.14 6.81 56.52 0.39 -6.76 16 7 C -0.33 -8.48 8.39 -15.06 -0.13 -8.61 16 8 H 0.07 1.89 7.01 -52.49 -0.37 1.52 16 9 N -0.60 -13.58 2.89 -162.72 -0.47 -14.05 16 10 C 0.10 2.03 4.55 -2.65 -0.01 2.02 16 11 C -0.13 -2.04 7.07 -24.70 -0.17 -2.22 16 12 C -0.12 -1.84 6.48 -24.90 -0.16 -2.00 16 13 C 0.15 2.69 3.38 -66.96 -0.23 2.46 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 15 C 0.11 2.16 5.22 -4.04 -0.02 2.14 16 16 N -0.67 -13.71 4.80 -61.28 -0.29 -14.00 16 17 C 0.60 12.08 7.82 -12.38 -0.10 11.98 16 18 O -0.55 -11.75 16.79 5.30 0.09 -11.66 16 19 C 0.02 0.38 6.81 -83.72 -0.57 -0.19 16 20 C 0.08 1.32 11.22 -17.88 -0.20 1.12 16 21 N -0.59 -8.88 11.41 19.43 0.22 -8.66 16 22 S 0.70 9.95 23.69 -107.50 -2.55 7.41 16 23 N -0.53 -9.49 11.00 23.18 0.26 -9.24 16 24 H 0.26 7.78 8.73 -40.82 -0.36 7.42 16 25 H 0.06 1.33 6.27 -51.93 -0.33 1.00 16 26 H 0.03 0.55 5.34 -51.93 -0.28 0.28 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 33 H 0.42 9.05 5.51 -40.82 -0.22 8.82 16 34 H 0.21 2.79 8.06 -52.48 -0.42 2.37 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -31.26 292.46 -7.28 -38.54 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.82 Total: 5.13 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.68 Total: 6.55 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: 0.47 Total: -72.50 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.20 Total: 22.12 kcal Atomic # 16 Polarization: 9.95 SS G_CDS: -2.55 Total: 7.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.26 -7.28 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027772175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.337 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds