Wall clock time and date at job start Tue Mar 31 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47146 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47562 * 240.00071 * 3 2 1 6 6 H 1.48499 * 109.47079 * 119.99721 * 3 2 1 7 7 C 1.38812 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00266 * 2.77474 * 7 2 1 9 9 N 1.36939 * 120.00034 * 182.78129 * 7 2 1 10 10 C 1.47425 * 125.64380 * 326.54225 * 9 7 2 11 11 C 1.54693 * 104.93768 * 204.07096 * 10 9 7 12 12 C 1.55155 * 101.67753 * 323.27793 * 11 10 9 13 13 C 1.47016 * 125.65006 * 146.84655 * 9 7 2 14 14 H 1.08994 * 109.88436 * 59.48888 * 13 9 7 15 15 C 1.53001 * 109.88603 * 298.32207 * 13 9 7 16 16 N 1.46501 * 109.46909 * 59.32775 * 15 13 9 17 17 C 1.34779 * 120.00287 * 186.18023 * 16 15 13 18 18 O 1.21570 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.47742 * 120.00439 * 180.02562 * 17 16 15 20 20 C 1.39346 * 124.11935 * 179.72399 * 19 17 16 21 21 N 1.30092 * 112.14976 * 179.84477 * 20 19 17 22 22 S 1.55930 * 108.75100 * 0.40072 * 21 20 19 23 23 N 1.31493 * 124.11553 * 0.02562 * 19 17 16 24 24 H 0.96997 * 120.00117 * 174.95748 * 1 2 3 25 25 H 1.08995 * 110.37002 * 323.00215 * 10 9 7 26 26 H 1.08998 * 110.36784 * 85.32908 * 10 9 7 27 27 H 1.09007 * 111.10019 * 205.10721 * 11 10 9 28 28 H 1.08996 * 110.81684 * 81.32201 * 11 10 9 29 29 H 1.09003 * 110.72324 * 276.96973 * 12 11 10 30 30 H 1.09001 * 110.71622 * 153.70132 * 12 11 10 31 31 H 1.08995 * 109.47463 * 179.32556 * 15 13 9 32 32 H 1.08998 * 109.47002 * 299.32965 * 15 13 9 33 33 H 0.97000 * 119.99831 * 6.17592 * 16 15 13 34 34 H 1.08008 * 123.92809 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 1.4712 -2.1369 -0.0462 9 7 3.3784 -1.2030 0.0570 10 6 4.2641 -0.1880 -0.5419 11 6 5.6150 -0.9116 -0.7521 12 6 5.6825 -1.8215 0.5028 13 6 4.2075 -2.2195 0.7209 14 1 4.0185 -3.1980 0.2795 15 6 3.8929 -2.2511 2.2178 16 7 2.4747 -2.5628 2.4123 17 6 1.9390 -2.5217 3.6484 18 8 2.6328 -2.2265 4.6020 19 6 0.5089 -2.8365 3.8446 20 6 -0.1311 -2.8259 5.0824 21 7 -1.3909 -3.1354 4.9858 22 16 -1.7240 -3.4197 3.4893 23 7 -0.3137 -3.1664 2.8732 24 1 -0.4850 -0.8368 -0.0738 25 1 3.8619 0.1505 -1.4968 26 1 4.3896 0.6547 0.1380 27 1 6.4424 -0.2021 -0.7652 28 1 5.5979 -1.5063 -1.6654 29 1 6.0633 -1.2676 1.3609 30 1 6.2948 -2.7020 0.3083 31 1 4.5023 -3.0148 2.7011 32 1 4.1146 -1.2782 2.6563 33 1 1.9212 -2.7986 1.6515 34 1 0.3609 -2.5856 6.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027772175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:39 Heat of formation + Delta-G solvation = 26.764199 kcal Electronic energy + Delta-G solvation = -20449.880865 eV Core-core repulsion = 17316.753671 eV Total energy + Delta-G solvation = -3133.127194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13220 -40.34765 -39.28319 -35.66141 -34.77343 -34.52695 -31.63193 -31.04108 -28.59156 -26.51227 -25.41159 -23.77291 -22.48887 -21.43715 -20.86160 -20.36351 -19.66130 -18.51049 -17.38291 -17.07061 -16.85279 -16.70332 -16.26624 -15.71019 -15.36700 -15.13650 -14.92265 -14.27960 -13.85202 -13.36504 -13.28605 -12.95647 -12.70008 -12.66349 -12.52453 -12.25674 -12.16880 -12.08571 -12.02265 -11.47257 -11.26891 -11.13771 -11.12600 -10.66411 -10.29639 -9.92274 -8.91107 -8.49085 -5.54431 -0.63310 0.35994 0.46404 0.62505 1.40065 1.48524 1.67221 1.99991 2.24014 2.54549 3.20494 3.33530 3.45566 3.77560 3.88932 4.02368 4.08923 4.17548 4.33649 4.42416 4.44126 4.63978 4.76093 4.81520 5.03761 5.05668 5.16995 5.27802 5.31081 5.48813 5.50768 5.79345 6.26838 6.50953 6.90030 7.06595 7.48964 8.24174 8.94696 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006606 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.728288 B = 4237.360634 C = 5094.556554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.057 4.057 3 Si 1.097 2.903 4 H -0.320 1.320 5 H -0.250 1.250 6 H -0.291 1.291 7 C -0.292 4.292 8 H 0.045 0.955 9 N -0.623 5.623 10 C 0.087 3.913 11 C -0.118 4.118 12 C -0.113 4.113 13 C 0.140 3.860 14 H 0.046 0.954 15 C 0.115 3.885 16 N -0.681 5.681 17 C 0.591 3.409 18 O -0.567 6.567 19 C -0.006 4.006 20 C 0.088 3.912 21 N -0.591 5.591 22 S 0.778 5.222 23 N -0.565 5.565 24 H 0.251 0.749 25 H 0.047 0.953 26 H 0.020 0.980 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.413 0.587 34 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -7.443 4.044 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.253 4.253 3 Si 0.927 3.073 4 H -0.249 1.249 5 H -0.175 1.175 6 H -0.219 1.219 7 C -0.421 4.421 8 H 0.062 0.938 9 N -0.350 5.350 10 C -0.037 4.037 11 C -0.156 4.156 12 C -0.151 4.151 13 C 0.034 3.966 14 H 0.064 0.936 15 C -0.010 4.010 16 N -0.331 5.331 17 C 0.372 3.628 18 O -0.447 6.447 19 C -0.179 4.179 20 C -0.105 4.105 21 N -0.433 5.433 22 S 0.820 5.180 23 N -0.416 5.416 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.252 0.748 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.025 -6.180 3.819 8.306 hybrid contribution 0.726 -1.078 0.347 1.345 sum 4.751 -7.258 4.165 9.623 Atomic orbital electron populations 1.70969 1.06964 1.29054 1.53031 1.27044 0.96495 1.04162 0.97553 0.83507 0.73006 0.72830 0.78006 1.24916 1.17460 1.21890 1.19619 0.80888 0.93108 1.48507 0.93764 1.44935 1.01379 1.27358 1.61373 1.22356 0.92564 0.92876 0.95923 1.22656 0.95684 0.98898 0.98342 1.22556 0.93040 1.00961 0.98545 1.21538 0.92669 0.93235 0.89194 0.93599 1.22080 0.80107 1.00024 0.98830 1.46059 1.12676 1.66000 1.08403 1.17048 0.84094 0.77801 0.83834 1.90718 1.61279 1.51446 1.41303 1.22476 0.97354 1.08294 0.89772 1.23862 0.87625 0.98576 1.00407 1.72191 1.19944 1.23432 1.27708 1.78648 1.09422 1.42817 0.87159 1.72332 1.11125 1.19842 1.38343 0.93973 0.93512 0.96251 0.88511 0.90567 0.90238 0.87846 0.90000 0.93444 0.74827 0.75348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 13.70 21.65 0.30 -58.70 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 3 Si 1.10 53.63 24.71 68.60 1.69 55.33 16 4 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16 5 H -0.25 -10.67 5.55 99.48 0.55 -10.12 16 6 H -0.29 -14.02 6.81 99.48 0.68 -13.34 16 7 C -0.29 -15.43 8.39 84.03 0.70 -14.73 16 8 H 0.04 2.54 7.01 -2.91 -0.02 2.52 16 9 N -0.62 -27.43 2.89 -668.72 -1.94 -29.37 16 10 C 0.09 3.36 4.55 86.78 0.39 3.75 16 11 C -0.12 -3.18 7.07 31.91 0.23 -2.95 16 12 C -0.11 -2.88 6.48 31.78 0.21 -2.67 16 13 C 0.14 4.90 3.38 45.34 0.15 5.06 16 14 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 15 C 0.11 4.18 5.22 86.38 0.45 4.63 16 16 N -0.68 -28.00 4.80 -466.07 -2.24 -30.24 16 17 C 0.59 24.20 7.82 86.76 0.68 24.87 16 18 O -0.57 -24.24 16.79 -3.94 -0.07 -24.31 16 19 C -0.01 -0.21 6.81 41.98 0.29 0.08 16 20 C 0.09 2.70 11.22 85.22 0.96 3.65 16 21 N -0.59 -17.17 11.41 -92.45 -1.05 -18.23 16 22 S 0.78 21.38 23.69 -56.49 -1.34 20.05 16 23 N -0.57 -20.62 11.00 -80.58 -0.89 -21.50 16 24 H 0.25 15.48 8.73 -92.71 -0.81 14.67 16 25 H 0.05 1.93 6.27 -2.39 -0.01 1.91 16 26 H 0.02 0.80 5.34 -2.39 -0.01 0.79 16 27 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 1.91 7.83 -2.39 -0.02 1.89 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 33 H 0.41 18.21 5.51 -92.71 -0.51 17.70 16 34 H 0.23 5.87 8.06 -2.91 -0.02 5.84 16 Total: -1.00 -69.42 292.46 -0.60 -70.01 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.41 Total: 18.04 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 4.52 Total: 18.93 kcal Atomic # 7 Polarization: -152.22 SS G_CDS: -5.82 Total: -158.04 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.31 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.69 Total: 55.33 kcal Atomic # 16 Polarization: 21.38 SS G_CDS: -1.34 Total: 20.05 kcal Total: -69.42 -0.60 -70.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027772175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.775 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds