Wall clock time and date at job start Tue Mar 31 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47333 * 300.00419 * 3 2 1 6 6 H 1.48500 * 109.46641 * 60.00071 * 3 2 1 7 7 C 1.38811 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64868 * 0.02562 * 9 7 2 11 11 C 1.54326 * 107.26970 * 178.91783 * 10 9 7 12 12 C 1.55153 * 102.94441 * 337.80791 * 11 10 9 13 13 H 1.09000 * 111.00533 * 277.38847 * 12 11 10 14 14 C 1.52999 * 111.00345 * 153.57473 * 12 11 10 15 15 N 1.46505 * 109.47080 * 175.00017 * 14 12 11 16 16 C 1.34769 * 120.00026 * 180.02562 * 15 14 12 17 17 O 1.21568 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.47757 * 120.00176 * 179.97438 * 16 15 14 19 19 C 1.39343 * 124.11713 * 179.97438 * 18 16 15 20 20 N 1.30094 * 112.14619 * 179.97438 * 19 18 16 21 21 S 1.55930 * 108.75261 * 0.02562 * 20 19 18 22 22 N 1.31486 * 124.11168 * 359.97312 * 18 16 15 23 23 C 1.47427 * 125.64839 * 179.97438 * 9 7 2 24 24 H 0.96992 * 119.99938 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.88158 * 59.50510 * 10 9 7 26 26 H 1.09000 * 109.88232 * 298.33780 * 10 9 7 27 27 H 1.09004 * 110.72007 * 219.44351 * 11 10 9 28 28 H 1.09004 * 110.86529 * 96.24542 * 11 10 9 29 29 H 1.09000 * 109.46909 * 55.00434 * 14 12 11 30 30 H 1.09000 * 109.47311 * 294.99941 * 14 12 11 31 31 H 0.96999 * 119.99638 * 0.02562 * 15 14 12 32 32 H 1.07997 * 123.92967 * 0.02562 * 19 18 16 33 33 H 1.09000 * 110.36077 * 85.31512 * 23 9 7 34 34 H 1.08995 * 110.36632 * 322.99254 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4482 -4.0442 -0.0284 12 6 0.8521 -4.6557 -0.6135 13 1 0.8567 -4.5958 -1.7019 14 6 1.0372 -6.1007 -0.1460 15 7 2.2062 -6.6829 -0.8100 16 6 2.5641 -7.9560 -0.5506 17 8 1.9172 -8.6212 0.2348 18 6 3.7428 -8.5433 -1.2207 19 6 4.1889 -9.8474 -1.0162 20 7 5.2453 -10.1211 -1.7245 21 16 5.6302 -8.8608 -2.5581 22 7 4.4982 -7.8989 -2.0826 23 6 1.9336 -3.7311 -0.0016 24 1 -0.4849 0.8400 0.0004 25 1 -0.5575 -2.0516 -0.8838 26 1 -0.5542 -2.0851 0.9017 27 1 -1.2983 -4.2511 -0.6785 28 1 -0.6331 -4.4211 0.9776 29 1 0.1496 -6.6808 -0.3986 30 1 1.1870 -6.1170 0.9335 31 1 2.7226 -6.1519 -1.4364 32 1 3.7127 -10.5497 -0.3481 33 1 2.1668 -4.0427 1.0166 34 1 2.8329 -3.7399 -0.6174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028425644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:42 Heat of formation + Delta-G solvation = 23.792580 kcal Electronic energy + Delta-G solvation = -19233.399476 eV Core-core repulsion = 16100.143423 eV Total energy + Delta-G solvation = -3133.256053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15240 -40.31021 -39.16432 -36.15006 -34.79701 -34.14015 -31.65455 -30.06226 -28.56818 -27.21514 -25.48905 -23.67722 -22.05368 -21.58109 -21.04619 -20.36965 -19.03930 -18.55936 -17.31700 -17.10771 -16.76071 -16.49438 -16.18638 -15.73705 -15.56930 -14.84598 -14.58868 -13.97335 -13.81727 -13.46217 -13.26006 -13.04676 -12.76457 -12.66190 -12.50860 -12.26005 -12.08334 -11.97988 -11.90614 -11.85644 -11.55407 -11.45566 -11.18258 -10.71002 -10.33273 -10.04949 -8.89187 -7.84921 -5.20355 -0.64221 0.36400 0.47152 0.64221 1.46097 1.46888 1.57249 1.99825 2.02937 2.49584 3.33354 3.40965 3.60541 3.68321 3.85016 4.02510 4.04762 4.06514 4.44908 4.50117 4.64186 4.70957 4.81234 4.92318 5.04903 5.10094 5.24759 5.35730 5.45178 5.46395 5.69758 5.79224 6.20910 6.37743 6.97866 7.11229 7.78698 8.42751 9.25636 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.003443 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.397640 B = 8130.402418 C = 9026.947484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.088 0.912 14 C 0.143 3.857 15 N -0.699 5.699 16 C 0.603 3.397 17 O -0.554 6.554 18 C -0.005 4.005 19 C 0.090 3.910 20 N -0.598 5.598 21 S 0.793 5.207 22 N -0.567 5.567 23 C 0.137 3.863 24 H 0.246 0.754 25 H 0.012 0.988 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.415 0.585 32 H 0.227 0.773 33 H 0.020 0.980 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -19.765 -5.839 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.159 4.159 12 C -0.116 4.116 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.350 5.350 16 C 0.384 3.616 17 O -0.432 6.432 18 C -0.178 4.178 19 C -0.102 4.102 20 N -0.440 5.440 21 S 0.835 5.165 22 N -0.419 5.419 23 C 0.012 3.988 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.023 0.977 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.243 0.757 33 H 0.038 0.962 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.901 -19.733 -6.618 23.048 hybrid contribution -0.950 1.327 1.046 1.938 sum 8.952 -18.405 -5.572 21.212 Atomic orbital electron populations 1.70195 1.06280 1.25157 1.58388 1.25655 0.96634 1.01030 1.02693 0.85016 0.78196 0.79462 0.76699 1.18979 1.21820 1.22023 1.19504 0.91012 0.83834 1.42807 0.90037 1.44827 1.02610 1.01193 1.87002 1.20935 0.83681 0.92015 0.97675 1.22718 0.96951 0.94755 1.01509 1.22420 0.96107 0.92407 1.00700 0.89401 1.21337 0.87790 0.91771 0.97187 1.45852 1.30860 1.12439 1.45848 1.16908 0.82001 0.81845 0.80797 1.90814 1.54254 1.61600 1.36510 1.22295 1.00453 0.94079 1.00958 1.23888 0.91703 0.95417 0.99184 1.72203 1.19736 1.35364 1.16723 1.78843 1.21218 0.85400 1.31082 1.72290 1.13015 1.39623 1.16968 1.21765 0.95285 0.84564 0.97185 0.94444 0.96960 0.97709 0.89427 0.90645 0.89584 0.91215 0.74867 0.75696 0.96182 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.31 21.65 0.22 -57.29 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 3 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.22 3.39 -692.03 -2.35 -34.57 16 10 C 0.18 8.90 5.37 86.73 0.47 9.36 16 11 C -0.12 -4.13 6.42 31.78 0.20 -3.92 16 12 C -0.10 -2.96 3.05 -9.41 -0.03 -2.99 16 13 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 14 C 0.14 3.62 5.13 86.38 0.44 4.06 16 15 N -0.70 -16.84 5.50 -466.05 -2.56 -19.40 16 16 C 0.60 15.06 7.82 86.76 0.68 15.73 16 17 O -0.55 -16.35 16.80 -3.93 -0.07 -16.41 16 18 C 0.00 -0.10 6.81 41.98 0.29 0.19 16 19 C 0.09 1.60 11.22 85.22 0.96 2.56 16 20 N -0.60 -10.15 11.41 -92.44 -1.05 -11.21 16 21 S 0.79 10.46 23.69 -56.49 -1.34 9.12 16 22 N -0.57 -10.87 11.00 -80.59 -0.89 -11.76 16 23 C 0.14 5.35 6.65 86.85 0.58 5.93 16 24 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 26 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 27 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 31 H 0.41 9.46 8.06 -92.71 -0.75 8.71 16 32 H 0.23 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.02 0.80 7.91 -2.39 -0.02 0.78 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.47 304.84 -0.71 -71.18 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.39 Total: 7.67 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 4.91 Total: 14.76 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -6.63 Total: -134.22 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.07 Total: -16.41 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 10.46 SS G_CDS: -1.34 Total: 9.12 kcal Total: -70.47 -0.71 -71.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028425644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.972 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds