Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48495 * 109.46994 * 239.99596 * 3 2 1 5 5 H 1.48493 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46866 * 120.00290 * 3 2 1 7 7 C 1.38813 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99347 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64750 * 359.97305 * 9 7 2 11 11 C 1.54909 * 104.83069 * 155.90752 * 10 9 7 12 12 C 1.55151 * 101.58428 * 37.00960 * 11 10 9 13 13 H 1.08999 * 110.72406 * 83.03839 * 12 11 10 14 14 C 1.52998 * 110.72034 * 206.13622 * 12 11 10 15 15 N 1.46506 * 109.47237 * 182.55580 * 14 12 11 16 16 C 1.34773 * 119.99969 * 179.72043 * 15 14 12 17 17 O 1.21564 * 119.99935 * 0.02562 * 16 15 14 18 18 C 1.47756 * 120.00087 * 179.97438 * 16 15 14 19 19 C 1.39341 * 124.11863 * 179.72507 * 18 16 15 20 20 N 1.30098 * 112.14781 * 179.82495 * 19 18 16 21 21 S 1.55927 * 108.75074 * 0.42917 * 20 19 18 22 22 N 1.31490 * 124.11333 * 0.03121 * 18 16 15 23 23 C 1.47316 * 125.61530 * 180.19326 * 9 7 2 24 24 H 0.96998 * 120.00421 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.36564 * 37.06933 * 10 9 7 26 26 H 1.08999 * 110.45900 * 274.78802 * 10 9 7 27 27 H 1.09007 * 111.00283 * 278.93270 * 11 10 9 28 28 H 1.09004 * 111.03771 * 155.09907 * 11 10 9 29 29 H 1.09001 * 109.47671 * 62.55920 * 14 12 11 30 30 H 1.08998 * 109.47454 * 302.55917 * 14 12 11 31 31 H 0.97005 * 119.99811 * 0.02562 * 15 14 12 32 32 H 1.07998 * 123.93004 * 0.02562 * 19 18 16 33 33 H 1.09006 * 110.06450 * 61.68558 * 23 9 7 34 34 H 1.09004 * 109.85111 * 300.41896 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7784 -4.7525 -0.0253 13 1 0.5446 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1977 -6.7209 -0.3297 16 6 2.6644 -7.8189 -0.9565 17 8 2.1940 -8.1543 -2.0261 18 6 3.7485 -8.6145 -0.3441 19 6 4.2908 -9.7650 -0.9131 20 7 5.2343 -10.2776 -0.1786 21 16 5.4059 -9.4017 1.0999 22 7 4.3151 -8.3261 0.8069 23 6 1.9338 -3.7298 0.0051 24 1 -0.4851 0.8400 0.0004 25 1 -0.5993 -1.7592 -0.6153 26 1 -0.5291 -2.4859 1.0182 27 1 -0.3519 -3.8989 -1.6992 28 1 -1.3590 -4.3334 -0.2777 29 1 1.4510 -5.5575 -1.9070 30 1 0.2416 -6.5590 -1.0689 31 1 2.5702 -6.4555 0.5258 32 1 3.9677 -10.1811 -1.8560 33 1 2.5276 -3.8682 0.9087 34 1 2.5624 -3.8543 -0.8767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028425645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = 49.090360 kcal Electronic energy + Delta-G solvation = -19256.036143 eV Core-core repulsion = 16123.877084 eV Total energy + Delta-G solvation = -3132.159059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34565 -39.25580 -37.61271 -34.85605 -33.84987 -32.46490 -29.90550 -28.53610 -27.52401 -25.59010 -24.00022 -22.63222 -20.74494 -20.03131 -19.69320 -19.61287 -17.83890 -16.82538 -16.37747 -15.95020 -15.68496 -15.24434 -14.74327 -14.45085 -13.97386 -13.60557 -12.89268 -12.55906 -12.51873 -11.79792 -11.75971 -11.72210 -11.53199 -11.47390 -11.33715 -10.96597 -10.79477 -10.53585 -10.25369 -10.11824 -10.01361 -9.80065 -9.54226 -9.53235 -9.06356 -8.65409 -6.84419 -5.65948 -3.07630 0.12797 1.08238 1.27925 1.31677 2.95833 3.00298 3.40251 3.44359 3.45749 4.20183 4.47924 4.61560 4.82107 5.06622 5.17130 5.21993 5.38235 5.51187 5.66055 5.84914 6.00208 6.05304 6.09628 6.31239 6.33639 6.54414 6.56501 6.69673 6.88665 7.38622 7.50282 7.61333 7.84687 7.98461 8.35698 9.21564 9.82232 10.47125 11.38019 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.003392 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.884407 B = 8252.251345 C = 8940.389349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.701 5.701 16 C 0.601 3.399 17 O -0.527 6.527 18 C 0.014 3.986 19 C 0.089 3.911 20 N -0.580 5.580 21 S 0.717 5.283 22 N -0.544 5.544 23 C 0.140 3.860 24 H 0.253 0.747 25 H 0.107 0.893 26 H 0.012 0.988 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.215 0.785 33 H 0.019 0.981 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -19.077 1.870 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.351 5.351 16 C 0.380 3.620 17 O -0.403 6.403 18 C -0.161 4.161 19 C -0.105 4.105 20 N -0.420 5.420 21 S 0.758 5.242 22 N -0.394 5.394 23 C 0.014 3.986 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.231 0.769 33 H 0.037 0.963 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.601 -19.281 2.719 20.903 hybrid contribution -0.394 1.102 -0.857 1.451 sum 7.207 -18.179 1.862 19.644 Atomic orbital electron populations 1.69781 1.04886 1.24905 1.57573 1.24784 0.95735 0.97714 1.02416 0.86145 0.78404 0.83019 0.77891 1.21150 1.21543 1.21239 1.19037 0.90480 0.82518 1.43181 0.90604 1.44567 1.01952 0.99675 1.86888 1.21929 0.84638 0.92490 0.98218 1.23008 0.95430 0.98566 1.00359 1.22458 0.98442 0.93904 0.98663 0.90465 1.21606 0.88850 0.91663 0.97098 1.45936 1.38281 1.25979 1.24949 1.16743 0.80599 0.80488 0.84160 1.90833 1.58739 1.69852 1.20902 1.22609 1.02430 0.98971 0.92081 1.23792 0.91789 0.92761 1.02109 1.72273 1.22934 1.34649 1.12181 1.79104 1.25505 1.01097 1.18455 1.72474 1.15289 1.31917 1.19756 1.21393 0.93423 0.85953 0.97804 0.93666 0.87494 0.97021 0.91740 0.92038 0.90664 0.91068 0.75344 0.76883 0.96276 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.41 3.40 -169.83 -0.58 -15.98 16 10 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 11 C -0.13 -2.43 6.54 -24.59 -0.16 -2.59 16 12 C -0.12 -1.88 2.98 -88.79 -0.26 -2.15 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 14 C 0.13 1.86 5.00 -4.04 -0.02 1.84 16 15 N -0.70 -9.25 5.43 -61.28 -0.33 -9.58 16 16 C 0.60 8.09 7.82 -12.37 -0.10 7.99 16 17 O -0.53 -8.29 16.80 5.31 0.09 -8.20 16 18 C 0.01 0.17 6.81 -83.71 -0.57 -0.40 16 19 C 0.09 0.89 11.22 -17.88 -0.20 0.69 16 20 N -0.58 -5.61 11.41 19.43 0.22 -5.39 16 21 S 0.72 5.66 23.69 -107.50 -2.55 3.11 16 22 N -0.54 -5.81 11.00 23.18 0.26 -5.55 16 23 C 0.14 2.85 6.67 -2.90 -0.02 2.83 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 1.15 8.05 -51.92 -0.42 0.74 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.41 5.11 7.99 -40.82 -0.33 4.79 16 32 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -31.94 303.93 -8.32 -40.26 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.95 Total: 0.98 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.60 Total: 5.00 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.13 Total: -62.76 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -2.55 Total: 3.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.94 -8.32 -40.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028425645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds