Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48495 * 109.46994 * 239.99596 * 3 2 1 5 5 H 1.48493 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46866 * 120.00290 * 3 2 1 7 7 C 1.38813 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99347 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64750 * 359.97305 * 9 7 2 11 11 C 1.54909 * 104.83069 * 155.90752 * 10 9 7 12 12 C 1.55151 * 101.58428 * 37.00960 * 11 10 9 13 13 H 1.08999 * 110.72406 * 83.03839 * 12 11 10 14 14 C 1.52998 * 110.72034 * 206.13622 * 12 11 10 15 15 N 1.46506 * 109.47237 * 182.55580 * 14 12 11 16 16 C 1.34773 * 119.99969 * 179.72043 * 15 14 12 17 17 O 1.21564 * 119.99935 * 0.02562 * 16 15 14 18 18 C 1.47756 * 120.00087 * 179.97438 * 16 15 14 19 19 C 1.39341 * 124.11863 * 179.72507 * 18 16 15 20 20 N 1.30098 * 112.14781 * 179.82495 * 19 18 16 21 21 S 1.55927 * 108.75074 * 0.42917 * 20 19 18 22 22 N 1.31490 * 124.11333 * 0.03121 * 18 16 15 23 23 C 1.47316 * 125.61530 * 180.19326 * 9 7 2 24 24 H 0.96998 * 120.00421 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.36564 * 37.06933 * 10 9 7 26 26 H 1.08999 * 110.45900 * 274.78802 * 10 9 7 27 27 H 1.09007 * 111.00283 * 278.93270 * 11 10 9 28 28 H 1.09004 * 111.03771 * 155.09907 * 11 10 9 29 29 H 1.09001 * 109.47671 * 62.55920 * 14 12 11 30 30 H 1.08998 * 109.47454 * 302.55917 * 14 12 11 31 31 H 0.97005 * 119.99811 * 0.02562 * 15 14 12 32 32 H 1.07998 * 123.93004 * 0.02562 * 19 18 16 33 33 H 1.09006 * 110.06450 * 61.68558 * 23 9 7 34 34 H 1.09004 * 109.85111 * 300.41896 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7784 -4.7525 -0.0253 13 1 0.5446 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1977 -6.7209 -0.3297 16 6 2.6644 -7.8189 -0.9565 17 8 2.1940 -8.1543 -2.0261 18 6 3.7485 -8.6145 -0.3441 19 6 4.2908 -9.7650 -0.9131 20 7 5.2343 -10.2776 -0.1786 21 16 5.4059 -9.4017 1.0999 22 7 4.3151 -8.3261 0.8069 23 6 1.9338 -3.7298 0.0051 24 1 -0.4851 0.8400 0.0004 25 1 -0.5993 -1.7592 -0.6153 26 1 -0.5291 -2.4859 1.0182 27 1 -0.3519 -3.8989 -1.6992 28 1 -1.3590 -4.3334 -0.2777 29 1 1.4510 -5.5575 -1.9070 30 1 0.2416 -6.5590 -1.0689 31 1 2.5702 -6.4555 0.5258 32 1 3.9677 -10.1811 -1.8560 33 1 2.5276 -3.8682 0.9087 34 1 2.5624 -3.8543 -0.8767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028425645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = 25.642396 kcal Electronic energy + Delta-G solvation = -19257.052923 eV Core-core repulsion = 16123.877084 eV Total energy + Delta-G solvation = -3133.175839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16256 -40.32999 -39.15102 -36.16391 -34.80621 -34.13710 -31.65366 -30.03509 -28.56593 -27.23969 -25.47837 -23.69438 -22.16183 -21.46634 -21.01741 -20.37163 -19.04143 -18.60768 -17.33242 -17.08126 -16.83528 -16.53380 -16.23195 -15.69672 -15.57528 -14.94976 -14.30405 -14.26226 -13.53839 -13.41347 -13.24793 -13.14011 -12.81815 -12.65276 -12.51536 -12.26667 -12.09116 -12.04862 -11.91318 -11.83163 -11.59209 -11.39836 -11.15535 -10.72935 -10.34578 -10.06369 -8.87895 -7.77054 -5.21259 -0.65171 0.35442 0.46107 0.63664 1.46526 1.49534 1.56030 1.98188 2.02201 2.49949 3.32124 3.39861 3.61150 3.70239 3.83503 3.97708 4.04492 4.07679 4.45485 4.49243 4.66533 4.70385 4.78774 4.91567 5.04627 5.14687 5.24694 5.35076 5.40349 5.47702 5.67645 5.83623 6.32547 6.36805 6.96803 7.11848 7.79403 8.42839 9.24539 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.003392 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.884407 B = 8252.251345 C = 8940.389349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.142 3.858 15 N -0.699 5.699 16 C 0.603 3.397 17 O -0.554 6.554 18 C -0.005 4.005 19 C 0.090 3.910 20 N -0.598 5.598 21 S 0.795 5.205 22 N -0.567 5.567 23 C 0.137 3.863 24 H 0.247 0.753 25 H 0.072 0.928 26 H -0.011 1.011 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.415 0.585 32 H 0.226 0.774 33 H 0.024 0.976 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -20.613 2.390 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.115 4.115 13 H 0.113 0.887 14 C 0.019 3.981 15 N -0.350 5.350 16 C 0.384 3.616 17 O -0.432 6.432 18 C -0.178 4.178 19 C -0.102 4.102 20 N -0.440 5.440 21 S 0.837 5.163 22 N -0.419 5.419 23 C 0.012 3.988 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.007 0.993 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.252 0.748 32 H 0.243 0.757 33 H 0.042 0.958 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.714 -20.848 3.234 22.826 hybrid contribution -0.620 1.525 -0.917 1.884 sum 8.094 -19.323 2.317 21.078 Atomic orbital electron populations 1.70043 1.06147 1.25104 1.58489 1.25621 0.96657 1.00930 1.02685 0.85135 0.77150 0.78802 0.78146 1.20387 1.21833 1.20447 1.19414 0.90970 0.83983 1.42768 0.90419 1.44898 1.02873 1.00900 1.86843 1.21739 0.83921 0.95068 0.96628 1.22844 0.97657 0.95213 1.00206 1.22294 0.95808 0.93343 1.00010 0.88748 1.21379 0.89825 0.91092 0.95813 1.45847 1.38109 1.25941 1.25087 1.16931 0.80675 0.80274 0.83731 1.90813 1.59818 1.70562 1.22052 1.22273 1.02954 0.99723 0.92844 1.23879 0.91549 0.92262 1.02508 1.72200 1.23182 1.35498 1.13150 1.78822 1.22598 0.98603 1.16302 1.72281 1.16352 1.33473 1.19775 1.21557 0.94812 0.84792 0.97664 0.94303 0.91049 0.99289 0.91534 0.88997 0.91859 0.89460 0.74830 0.75747 0.95786 0.96019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.58 10.09 21.65 0.22 -56.36 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 3 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.63 -32.39 3.40 -691.21 -2.35 -34.74 16 10 C 0.15 7.36 5.89 86.85 0.51 7.87 16 11 C -0.12 -4.19 6.54 31.98 0.21 -3.98 16 12 C -0.10 -2.94 2.98 -9.61 -0.03 -2.97 16 13 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 14 C 0.14 3.77 5.00 86.38 0.43 4.20 16 15 N -0.70 -17.30 5.43 -466.05 -2.53 -19.83 16 16 C 0.60 15.46 7.82 86.76 0.68 16.14 16 17 O -0.55 -16.88 16.80 -3.92 -0.07 -16.95 16 18 C 0.00 -0.11 6.81 41.98 0.29 0.18 16 19 C 0.09 1.63 11.22 85.21 0.96 2.59 16 20 N -0.60 -10.27 11.41 -92.44 -1.05 -11.32 16 21 S 0.80 10.52 23.69 -56.49 -1.34 9.18 16 22 N -0.57 -10.94 11.00 -80.58 -0.89 -11.82 16 23 C 0.14 5.46 6.67 86.68 0.58 6.03 16 24 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.07 2.30 8.05 -2.38 -0.02 2.28 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.06 1.86 8.00 -2.39 -0.02 1.85 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.42 9.58 7.99 -92.70 -0.74 8.84 16 32 H 0.23 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 Total: -1.00 -69.61 303.93 -0.63 -70.24 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.40 Total: 9.89 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 4.95 Total: 13.89 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -6.60 Total: -134.07 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.07 Total: -16.95 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 10.52 SS G_CDS: -1.34 Total: 9.18 kcal Total: -69.61 -0.63 -70.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028425645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.881 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds