Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21629 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.47169 * 120.00279 * 179.97438 * 16 15 14 19 19 C 1.38248 * 128.47590 * 179.97438 * 18 16 15 20 20 N 1.31246 * 111.88484 * 180.02562 * 19 18 16 21 21 N 1.27337 * 120.03890 * 0.02562 * 20 19 18 22 22 S 1.56632 * 109.74024 * 359.68668 * 21 20 19 23 23 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 24 24 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 26 26 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 27 27 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 28 28 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 29 29 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 30 30 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 31 31 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 32 32 H 1.07996 * 124.05762 * 0.02562 * 19 18 16 33 33 H 1.09002 * 110.36346 * 322.70225 * 23 9 7 34 34 H 1.08999 * 110.37028 * 84.91483 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9987 -8.5865 -0.4859 18 6 3.9828 -8.2853 -1.6726 19 6 4.5335 -9.5523 -1.6203 20 7 5.6869 -9.6105 -2.2439 21 7 6.1632 -8.5696 -2.8016 22 16 5.1796 -7.3666 -2.6044 23 6 1.9495 -3.7169 -0.2720 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5671 -2.1845 0.7439 26 1 -0.5328 -1.9641 -1.0279 27 1 -1.2640 -4.1759 -1.0702 28 1 -0.6329 -4.5159 0.5729 29 1 1.0852 -6.2033 0.3968 30 1 0.2467 -6.6302 -1.1141 31 1 2.9051 -5.9145 -1.7435 32 1 4.0702 -10.3932 -1.1257 33 1 2.8620 -3.6576 -0.8654 34 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028427140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = 61.952500 kcal Electronic energy + Delta-G solvation = -19185.115115 eV Core-core repulsion = 16053.513800 eV Total energy + Delta-G solvation = -3131.601315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13359 -39.76636 -37.74629 -34.90728 -32.79127 -32.27774 -30.00856 -28.67504 -27.61191 -25.65642 -24.03235 -22.63457 -21.00359 -20.10645 -19.95593 -19.40368 -17.71981 -16.85833 -16.27901 -16.19395 -15.57533 -15.10577 -14.77440 -14.60604 -14.19316 -13.65593 -13.22641 -13.02017 -12.45450 -12.29666 -12.12641 -11.82588 -11.49787 -10.96286 -10.85843 -10.70261 -10.58737 -10.42416 -10.32613 -10.17594 -10.13782 -10.02538 -9.92474 -9.74244 -9.25860 -8.63257 -6.89658 -5.78402 -3.11223 -0.59436 0.47873 1.15130 1.65421 2.71998 2.77065 3.36143 3.41572 3.43679 3.69649 4.35677 4.42091 4.46759 4.95814 5.10718 5.24459 5.30560 5.46027 5.57522 5.76579 5.89098 5.93758 6.13865 6.24273 6.39736 6.44265 6.56553 6.80029 7.12210 7.31123 7.49378 7.57296 7.76653 7.79536 8.19811 9.15693 9.76301 10.42088 11.33684 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.003677 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.360661 B = 7613.631961 C = 8594.039691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.120 4.120 13 H 0.082 0.918 14 C 0.132 3.868 15 N -0.713 5.713 16 C 0.599 3.401 17 O -0.520 6.520 18 C -0.285 4.285 19 C 0.072 3.928 20 N -0.253 5.253 21 N -0.259 5.259 22 S 0.430 5.570 23 C 0.140 3.860 24 H 0.253 0.747 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.402 0.598 32 H 0.216 0.784 33 H 0.036 0.964 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -14.952 -5.120 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.140 4.140 13 H 0.100 0.900 14 C 0.009 3.991 15 N -0.364 5.364 16 C 0.381 3.619 17 O -0.396 6.396 18 C -0.426 4.426 19 C -0.095 4.095 20 N -0.117 5.117 21 N -0.240 5.240 22 S 0.565 5.435 23 C 0.014 3.986 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.237 0.763 32 H 0.232 0.768 33 H 0.054 0.946 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.383 -14.665 -5.684 16.974 hybrid contribution -0.332 0.501 0.588 0.841 sum 6.051 -14.164 -5.097 16.224 Atomic orbital electron populations 1.69968 1.04941 1.25134 1.56548 1.24823 0.95691 0.97698 1.01989 0.86129 0.78714 0.83599 0.77525 1.21575 1.21737 1.20617 1.19054 0.91130 0.82541 1.43364 0.90423 1.44475 1.01699 1.00882 1.86156 1.21170 0.84424 0.88351 1.00955 1.22855 0.95137 0.99683 0.99582 1.22651 0.98937 0.91479 1.00921 0.89964 1.21551 0.83788 0.94688 0.99046 1.45986 1.24288 1.09588 1.56512 1.16471 0.82812 0.82656 0.79936 1.90857 1.52962 1.54724 1.41097 1.28145 1.04288 0.99061 1.11100 1.24480 0.90070 0.97621 0.97335 1.70713 1.12097 1.19069 1.09865 1.78867 1.24465 0.99945 1.20714 1.82778 1.04791 1.21302 1.34642 1.21587 0.94011 0.86802 0.96196 0.93693 0.94042 0.93284 0.91852 0.92098 0.90665 0.90955 0.76348 0.76757 0.94597 0.96285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.36 55.49 0.57 -25.70 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.26 10.26 -15.06 -0.15 -6.41 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.61 -14.67 3.39 -170.07 -0.58 -15.24 16 10 C 0.18 4.04 5.38 -3.07 -0.02 4.02 16 11 C -0.13 -2.24 6.42 -24.89 -0.16 -2.40 16 12 C -0.12 -1.79 3.10 -88.47 -0.27 -2.06 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.65 5.12 -4.04 -0.02 1.63 16 15 N -0.71 -7.87 5.40 -61.46 -0.33 -8.21 16 16 C 0.60 7.07 7.80 -12.64 -0.10 6.97 16 17 O -0.52 -7.71 16.98 5.25 0.09 -7.62 16 18 C -0.28 -2.81 6.81 -35.95 -0.25 -3.06 16 19 C 0.07 0.69 11.55 -17.80 -0.21 0.48 16 20 N -0.25 -2.82 11.54 30.36 0.35 -2.47 16 21 N -0.26 -2.83 12.51 60.35 0.75 -2.08 16 22 S 0.43 3.63 23.05 -107.50 -2.48 1.15 16 23 C 0.14 2.60 6.41 -2.53 -0.02 2.58 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.04 1.07 7.62 -51.93 -0.40 0.67 16 26 H 0.05 1.25 7.29 -51.93 -0.38 0.87 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 29 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.40 3.77 7.77 -40.82 -0.32 3.45 16 32 H 0.22 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -31.83 306.06 -7.32 -39.15 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.00 Total: -1.55 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.29 Total: 1.51 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.77 Total: -53.70 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -2.48 Total: 1.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.83 -7.32 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028427140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.101 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds