Wall clock time and date at job start Tue Mar 31 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21629 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.47169 * 120.00279 * 179.97438 * 16 15 14 19 19 C 1.38248 * 128.47590 * 179.97438 * 18 16 15 20 20 N 1.31246 * 111.88484 * 180.02562 * 19 18 16 21 21 N 1.27337 * 120.03890 * 0.02562 * 20 19 18 22 22 S 1.56632 * 109.74024 * 359.68668 * 21 20 19 23 23 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 24 24 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 26 26 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 27 27 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 28 28 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 29 29 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 30 30 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 31 31 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 32 32 H 1.07996 * 124.05762 * 0.02562 * 19 18 16 33 33 H 1.09002 * 110.36346 * 322.70225 * 23 9 7 34 34 H 1.08999 * 110.37028 * 84.91483 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9987 -8.5865 -0.4859 18 6 3.9828 -8.2853 -1.6726 19 6 4.5335 -9.5523 -1.6203 20 7 5.6869 -9.6105 -2.2439 21 7 6.1632 -8.5696 -2.8016 22 16 5.1796 -7.3666 -2.6044 23 6 1.9495 -3.7169 -0.2720 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5671 -2.1845 0.7439 26 1 -0.5328 -1.9641 -1.0279 27 1 -1.2640 -4.1759 -1.0702 28 1 -0.6329 -4.5159 0.5729 29 1 1.0852 -6.2033 0.3968 30 1 0.2467 -6.6302 -1.1141 31 1 2.9051 -5.9145 -1.7435 32 1 4.0702 -10.3932 -1.1257 33 1 2.8620 -3.6576 -0.8654 34 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028427140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:38 Heat of formation + Delta-G solvation = 39.107696 kcal Electronic energy + Delta-G solvation = -19186.105740 eV Core-core repulsion = 16053.513800 eV Total energy + Delta-G solvation = -3132.591940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91190 -40.74519 -39.21342 -36.14279 -34.37860 -33.22544 -31.64154 -30.07235 -28.62665 -27.21301 -25.46740 -23.63185 -22.11553 -21.64717 -21.15035 -20.24034 -18.91481 -18.43869 -17.29842 -17.05299 -16.78915 -16.52449 -15.99503 -15.74567 -15.53038 -15.02374 -14.63898 -13.94046 -13.83955 -13.80292 -13.42255 -13.02851 -12.98794 -12.74951 -12.62853 -11.99402 -11.93387 -11.83705 -11.53834 -11.45906 -11.41669 -11.19588 -11.18308 -10.92818 -10.65908 -10.21416 -8.86211 -7.84194 -5.18015 -1.36082 -0.24033 0.41648 0.88116 1.48347 1.49219 1.58089 1.83733 1.87155 2.51453 2.96295 3.34298 3.56537 3.62640 3.66499 3.88220 4.04611 4.06042 4.46873 4.58993 4.65710 4.73051 4.83384 4.95176 5.06356 5.12470 5.22584 5.45415 5.50559 5.71198 5.81803 6.22924 6.25169 6.56017 6.90641 7.13021 7.81383 8.45426 9.26756 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.003677 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.360661 B = 7613.631961 C = 8594.039691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.098 4.098 13 H 0.094 0.906 14 C 0.143 3.857 15 N -0.707 5.707 16 C 0.605 3.395 17 O -0.552 6.552 18 C -0.301 4.301 19 C 0.078 3.922 20 N -0.276 5.276 21 N -0.288 5.288 22 S 0.497 5.503 23 C 0.134 3.866 24 H 0.246 0.754 25 H 0.000 1.000 26 H 0.014 0.986 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.233 0.767 33 H 0.052 0.948 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -15.952 -5.886 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.118 4.118 13 H 0.112 0.888 14 C 0.020 3.980 15 N -0.358 5.358 16 C 0.389 3.611 17 O -0.431 6.431 18 C -0.442 4.442 19 C -0.090 4.090 20 N -0.139 5.139 21 N -0.269 5.269 22 S 0.632 5.368 23 C 0.009 3.991 24 H 0.055 0.945 25 H 0.018 0.982 26 H 0.033 0.967 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.249 0.751 33 H 0.070 0.930 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.490 -15.691 -6.470 18.551 hybrid contribution -0.624 0.837 0.834 1.336 sum 6.866 -14.854 -5.635 17.307 Atomic orbital electron populations 1.70190 1.06341 1.25189 1.58166 1.25634 0.96514 1.00969 1.02705 0.85121 0.77887 0.79441 0.77278 1.21328 1.22547 1.19191 1.19471 0.91707 0.83899 1.42030 0.89791 1.44812 1.02505 1.02290 1.85960 1.20945 0.83929 0.92176 0.97438 1.22707 0.97026 0.95082 1.01198 1.22458 0.96074 0.92354 1.00893 0.88816 1.21338 0.84926 0.92795 0.98947 1.45862 1.23995 1.09664 1.56324 1.16533 0.82938 0.82329 0.79261 1.90847 1.54114 1.55505 1.42594 1.27974 1.04215 0.99765 1.12246 1.24780 0.89493 0.98146 0.96549 1.70767 1.12842 1.19522 1.10753 1.78678 1.25829 1.00902 1.21501 1.82499 1.02764 1.19166 1.32366 1.21814 0.95543 0.84796 0.96954 0.94501 0.98201 0.96742 0.89505 0.90867 0.91223 0.89523 0.75251 0.75125 0.92962 0.96204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.09 10.36 21.65 0.22 -55.86 16 2 C -0.07 -3.61 5.48 84.86 0.46 -3.15 16 3 Si 0.97 44.52 29.56 68.60 2.03 46.55 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.24 -13.02 10.26 84.03 0.86 -12.16 16 8 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 9 N -0.63 -30.41 3.39 -691.98 -2.35 -32.76 16 10 C 0.18 8.43 5.38 86.73 0.47 8.90 16 11 C -0.12 -3.87 6.42 31.78 0.20 -3.67 16 12 C -0.10 -2.66 3.10 -9.40 -0.03 -2.68 16 13 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 14 C 0.14 3.12 5.12 86.38 0.44 3.56 16 15 N -0.71 -13.47 5.40 -466.62 -2.52 -15.99 16 16 C 0.61 12.81 7.80 86.59 0.68 13.49 16 17 O -0.55 -15.25 16.98 -4.12 -0.07 -15.32 16 18 C -0.30 -5.25 6.81 24.62 0.17 -5.08 16 19 C 0.08 1.36 11.55 84.78 0.98 2.33 16 20 N -0.28 -5.73 11.54 -57.87 -0.67 -6.40 16 21 N -0.29 -5.79 12.51 37.02 0.46 -5.33 16 22 S 0.50 7.12 23.05 -56.49 -1.30 5.82 16 23 C 0.13 4.70 6.41 86.85 0.56 5.25 16 24 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.00 -0.01 7.62 -2.39 -0.02 -0.03 16 26 H 0.01 0.76 7.29 -2.39 -0.02 0.74 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 29 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.41 6.29 7.77 -92.71 -0.72 5.57 16 32 H 0.23 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 0.71 8.01 -2.39 -0.02 0.70 16 Total: -1.00 -70.14 306.06 1.01 -69.13 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.41 Total: 3.36 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.79 Total: 6.80 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.85 Total: -116.34 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.07 Total: -15.32 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -1.30 Total: 5.82 kcal Total: -70.14 1.01 -69.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028427140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.237 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds