Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36207 * 117.00154 * 2 1 4 4 C 1.34087 * 122.50184 * 359.97438 * 3 2 1 5 5 S 1.70602 * 110.97603 * 179.74443 * 4 3 2 6 6 C 1.75816 * 91.62185 * 0.35585 * 5 4 3 7 7 C 1.46541 * 125.42999 * 179.91239 * 6 5 4 8 8 O 1.21710 * 120.00362 * 179.69302 * 7 6 5 9 9 N 1.34781 * 119.99935 * 359.69535 * 7 6 5 10 10 C 1.46499 * 120.00166 * 180.02562 * 9 7 6 11 11 C 1.53496 * 114.20781 * 154.99901 * 10 9 7 12 12 N 1.47062 * 87.98485 * 87.52018 * 11 10 9 13 13 C 1.36939 * 136.05593 * 207.08750 * 12 11 10 14 14 H 1.08008 * 119.99868 * 7.82597 * 13 12 11 15 15 C 1.38808 * 120.00203 * 187.82575 * 13 12 11 16 16 N 1.31618 * 119.99998 * 195.17052 * 15 13 12 17 17 Si 1.86797 * 119.99840 * 15.16580 * 15 13 12 18 18 H 1.48503 * 109.47450 * 270.00422 * 17 15 13 19 19 H 1.48503 * 109.47360 * 30.00092 * 17 15 13 20 20 H 1.48498 * 109.47360 * 150.00270 * 17 15 13 21 21 C 1.47059 * 87.88616 * 27.34176 * 12 11 10 22 22 C 1.36748 * 109.14336 * 359.64788 * 6 5 4 23 23 H 1.09004 * 109.47628 * 300.00302 * 1 2 3 24 24 H 1.09004 * 109.46859 * 59.99940 * 1 2 3 25 25 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.08001 * 124.51233 * 0.02562 * 4 3 2 27 27 H 0.96996 * 119.99820 * 359.97438 * 9 7 6 28 28 H 1.09006 * 113.27838 * 21.93040 * 10 9 7 29 29 H 1.09008 * 113.46447 * 332.73453 * 11 10 9 30 30 H 1.09003 * 113.46673 * 202.30352 * 11 10 9 31 31 H 0.96995 * 120.00365 * 354.90363 * 16 15 13 32 32 H 1.08997 * 113.47135 * 87.43718 * 21 12 11 33 33 H 1.09007 * 113.47198 * 217.88025 * 21 12 11 34 34 H 1.08000 * 123.36951 * 180.29859 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3690 -0.0005 5 16 2.4295 3.7036 0.0068 6 6 3.8354 2.6479 -0.0004 7 6 5.2317 3.0926 -0.0004 8 8 6.1315 2.2729 0.0000 9 7 5.5196 4.4093 -0.0009 10 6 6.9155 4.8539 -0.0015 11 6 7.1300 6.2537 -0.5936 12 7 6.8724 6.8031 0.7460 13 6 6.3907 7.9805 1.2529 14 1 5.9780 8.7256 0.5889 15 6 6.4328 8.2163 2.6202 16 7 5.7166 9.1891 3.1426 17 14 7.5058 7.1527 3.7188 18 1 6.7221 5.9849 4.1955 19 1 8.6839 6.6774 2.9497 20 1 7.9646 7.9501 4.8845 21 6 7.3659 5.5341 1.3017 22 6 3.4183 1.3456 0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2895 2.4446 -0.0006 27 1 4.8026 5.0625 -0.0015 28 1 7.6078 4.0995 -0.3755 29 1 6.3765 6.5336 -1.3299 30 1 8.1475 6.4252 -0.9449 31 1 5.2175 9.7878 2.5653 32 1 8.4456 5.5159 1.4502 33 1 6.8134 5.2009 2.1804 34 1 4.0960 0.5047 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030780322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = 30.582742 kcal Electronic energy + Delta-G solvation = -19354.118360 eV Core-core repulsion = 16188.864000 eV Total energy + Delta-G solvation = -3165.254360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17418 -39.65268 -38.02666 -35.87770 -33.54561 -32.19096 -29.67340 -28.21856 -27.76611 -25.33599 -24.74033 -22.63838 -21.33574 -19.77014 -19.33451 -18.77950 -17.48934 -17.28696 -16.21740 -16.06217 -15.90854 -15.12834 -14.75111 -14.59001 -14.21709 -13.78518 -13.32781 -13.26795 -13.08974 -12.97758 -12.85549 -12.05810 -11.92507 -11.44246 -11.18874 -11.09637 -10.96428 -10.55727 -10.20270 -9.98345 -9.79938 -9.27374 -9.07810 -8.78903 -8.58774 -8.18331 -7.24354 -6.33896 -3.27496 0.35331 1.31712 1.75359 2.27351 2.95021 3.23040 3.41348 3.43070 3.49268 3.62211 4.57243 4.67106 4.71504 4.73532 4.86870 4.93361 5.07386 5.11458 5.17798 5.35972 5.53360 5.76414 5.83376 5.84420 5.94085 6.17284 6.20789 6.34038 6.39446 6.90951 6.98968 7.06435 7.68575 8.19774 8.28627 8.93080 9.46431 10.32123 11.15705 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.004380 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.276351 B = 6391.268570 C = 6804.692831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.101 3.899 4 C -0.346 4.346 5 S 0.243 5.757 6 C -0.234 4.234 7 C 0.590 3.410 8 O -0.532 6.532 9 N -0.688 5.688 10 C 0.100 3.900 11 C 0.109 3.891 12 N -0.624 5.624 13 C -0.308 4.308 14 H 0.083 0.917 15 C -0.020 4.020 16 N -0.930 5.930 17 Si 1.060 2.940 18 H -0.293 1.293 19 H -0.281 1.281 20 H -0.295 1.295 21 C 0.087 3.913 22 C -0.072 4.072 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.170 0.830 27 H 0.405 0.595 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 -15.489 -8.428 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.484 4.484 5 S 0.510 5.490 6 C -0.355 4.355 7 C 0.376 3.624 8 O -0.411 6.411 9 N -0.337 5.337 10 C -0.007 4.007 11 C -0.018 4.018 12 N -0.353 5.353 13 C -0.434 4.434 14 H 0.100 0.900 15 C -0.220 4.220 16 N -0.572 5.572 17 Si 0.891 3.109 18 H -0.221 1.221 19 H -0.207 1.207 20 H -0.223 1.223 21 C -0.040 4.040 22 C -0.107 4.107 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.118 0.882 26 H 0.188 0.812 27 H 0.241 0.759 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.825 -14.684 -6.751 18.414 hybrid contribution -0.954 -0.666 -1.497 1.896 sum -9.779 -15.350 -8.247 19.982 Atomic orbital electron populations 1.23033 0.78329 1.03890 1.01298 1.86107 1.21175 1.25223 1.89553 1.17531 0.91532 0.84683 1.01843 1.25116 1.05849 0.97722 1.19689 1.83276 0.92542 1.05695 1.67507 1.24509 0.97973 0.97537 1.15488 1.16812 0.86134 0.82764 0.76740 1.90812 1.46636 1.53047 1.50629 1.45358 1.09094 1.05969 1.73323 1.22512 0.82131 0.96565 0.99459 1.22757 0.98948 0.89244 0.90852 1.46400 1.73750 1.13700 1.01436 1.20132 1.35939 0.94051 0.93315 0.89981 1.25744 1.00549 1.01065 0.94634 1.70910 1.30105 1.19401 1.36767 0.83804 0.76626 0.74741 0.75700 1.22109 1.20748 1.22259 1.23208 0.98073 0.86497 0.96200 1.19905 0.92790 0.96850 1.01165 0.92727 0.92796 0.88194 0.81224 0.75942 0.87486 0.93165 0.93057 0.92840 0.92491 0.92603 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.93 101.05 1.00 1.21 16 2 O -0.31 -3.41 10.56 -20.40 -0.22 -3.63 16 3 C 0.10 1.22 6.61 -41.23 -0.27 0.95 16 4 C -0.35 -3.71 9.81 29.27 0.29 -3.42 16 5 S 0.24 2.89 22.15 -107.50 -2.38 0.51 16 6 C -0.23 -3.35 6.45 -36.78 -0.24 -3.59 16 7 C 0.59 9.92 7.78 -12.91 -0.10 9.81 16 8 O -0.53 -10.22 16.43 5.18 0.09 -10.14 16 9 N -0.69 -11.64 5.39 -54.84 -0.30 -11.93 16 10 C 0.10 1.77 4.61 -67.68 -0.31 1.45 16 11 C 0.11 2.03 8.44 -8.52 -0.07 1.96 16 12 N -0.62 -14.70 3.62 -184.65 -0.67 -15.36 16 13 C -0.31 -8.56 11.03 -15.06 -0.17 -8.73 16 14 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 15 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 16 N -0.93 -28.80 13.70 55.49 0.76 -28.04 16 17 Si 1.06 26.59 25.50 -169.99 -4.34 22.25 16 18 H -0.29 -7.19 6.97 56.52 0.39 -6.79 16 19 H -0.28 -6.55 5.66 56.52 0.32 -6.23 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 C 0.09 1.83 5.43 -8.39 -0.05 1.79 16 22 C -0.07 -0.97 10.00 -40.31 -0.40 -1.37 16 23 H 0.05 0.34 7.84 -51.93 -0.41 -0.07 16 24 H 0.05 0.32 7.84 -51.93 -0.41 -0.09 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.17 1.38 6.96 -52.49 -0.37 1.02 16 27 H 0.41 6.66 7.87 -40.82 -0.32 6.34 16 28 H 0.11 1.77 7.45 -51.93 -0.39 1.38 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.26 7.96 8.73 -40.82 -0.36 7.61 16 32 H 0.06 1.16 7.02 -51.93 -0.36 0.80 16 33 H 0.06 1.25 6.22 -51.93 -0.32 0.93 16 34 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -33.15 303.19 -6.83 -39.98 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.93 Total: 2.42 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.42 Total: -0.63 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.20 Total: -55.34 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.13 Total: -13.77 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.34 Total: 22.25 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.38 Total: 0.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.15 -6.83 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030780322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.564 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds