Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36207 * 117.00154 * 2 1 4 4 C 1.34087 * 122.50184 * 359.97438 * 3 2 1 5 5 S 1.70602 * 110.97603 * 179.74443 * 4 3 2 6 6 C 1.75816 * 91.62185 * 0.35585 * 5 4 3 7 7 C 1.46541 * 125.42999 * 179.91239 * 6 5 4 8 8 O 1.21710 * 120.00362 * 179.69302 * 7 6 5 9 9 N 1.34781 * 119.99935 * 359.69535 * 7 6 5 10 10 C 1.46499 * 120.00166 * 180.02562 * 9 7 6 11 11 C 1.53496 * 114.20781 * 154.99901 * 10 9 7 12 12 N 1.47062 * 87.98485 * 87.52018 * 11 10 9 13 13 C 1.36939 * 136.05593 * 207.08750 * 12 11 10 14 14 H 1.08008 * 119.99868 * 7.82597 * 13 12 11 15 15 C 1.38808 * 120.00203 * 187.82575 * 13 12 11 16 16 N 1.31618 * 119.99998 * 195.17052 * 15 13 12 17 17 Si 1.86797 * 119.99840 * 15.16580 * 15 13 12 18 18 H 1.48503 * 109.47450 * 270.00422 * 17 15 13 19 19 H 1.48503 * 109.47360 * 30.00092 * 17 15 13 20 20 H 1.48498 * 109.47360 * 150.00270 * 17 15 13 21 21 C 1.47059 * 87.88616 * 27.34176 * 12 11 10 22 22 C 1.36748 * 109.14336 * 359.64788 * 6 5 4 23 23 H 1.09004 * 109.47628 * 300.00302 * 1 2 3 24 24 H 1.09004 * 109.46859 * 59.99940 * 1 2 3 25 25 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.08001 * 124.51233 * 0.02562 * 4 3 2 27 27 H 0.96996 * 119.99820 * 359.97438 * 9 7 6 28 28 H 1.09006 * 113.27838 * 21.93040 * 10 9 7 29 29 H 1.09008 * 113.46447 * 332.73453 * 11 10 9 30 30 H 1.09003 * 113.46673 * 202.30352 * 11 10 9 31 31 H 0.96995 * 120.00365 * 354.90363 * 16 15 13 32 32 H 1.08997 * 113.47135 * 87.43718 * 21 12 11 33 33 H 1.09007 * 113.47198 * 217.88025 * 21 12 11 34 34 H 1.08000 * 123.36951 * 180.29859 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3690 -0.0005 5 16 2.4295 3.7036 0.0068 6 6 3.8354 2.6479 -0.0004 7 6 5.2317 3.0926 -0.0004 8 8 6.1315 2.2729 0.0000 9 7 5.5196 4.4093 -0.0009 10 6 6.9155 4.8539 -0.0015 11 6 7.1300 6.2537 -0.5936 12 7 6.8724 6.8031 0.7460 13 6 6.3907 7.9805 1.2529 14 1 5.9780 8.7256 0.5889 15 6 6.4328 8.2163 2.6202 16 7 5.7166 9.1891 3.1426 17 14 7.5058 7.1527 3.7188 18 1 6.7221 5.9849 4.1955 19 1 8.6839 6.6774 2.9497 20 1 7.9646 7.9501 4.8845 21 6 7.3659 5.5341 1.3017 22 6 3.4183 1.3456 0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2895 2.4446 -0.0006 27 1 4.8026 5.0625 -0.0015 28 1 7.6078 4.0995 -0.3755 29 1 6.3765 6.5336 -1.3299 30 1 8.1475 6.4252 -0.9449 31 1 5.2175 9.7878 2.5653 32 1 8.4456 5.5159 1.4502 33 1 6.8134 5.2009 2.1804 34 1 4.0960 0.5047 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030780322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = 5.738060 kcal Electronic energy + Delta-G solvation = -19355.195707 eV Core-core repulsion = 16188.864000 eV Total energy + Delta-G solvation = -3166.331707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36218 -40.74317 -39.50394 -36.81452 -35.17277 -34.12879 -30.81182 -29.60922 -28.74900 -26.94850 -25.89606 -24.22766 -22.58380 -21.25694 -20.57199 -19.85813 -19.47765 -18.12747 -17.41351 -17.35624 -16.83277 -16.62564 -16.13997 -15.69112 -15.63341 -15.49537 -15.22688 -14.67067 -14.12257 -13.89422 -13.70285 -13.52861 -13.32371 -12.77404 -12.59741 -12.32725 -12.03106 -11.95235 -11.93403 -11.63303 -11.35982 -11.26045 -10.85623 -10.18964 -9.94509 -9.24878 -9.08824 -8.57957 -5.43771 -0.66704 0.34702 0.81526 1.27522 1.41773 1.49763 1.64840 1.87224 2.02228 2.47550 2.53721 3.00897 3.19323 3.57161 3.68038 3.91418 4.08629 4.27236 4.37088 4.38876 4.41105 4.52724 4.65905 4.70428 4.74426 4.76809 4.81701 4.88297 4.99941 5.21325 5.48245 5.98462 6.22571 6.36247 6.72500 6.97237 7.35520 8.29060 8.93573 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.004380 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.276351 B = 6391.268570 C = 6804.692831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.089 3.911 4 C -0.326 4.326 5 S 0.260 5.740 6 C -0.265 4.265 7 C 0.594 3.406 8 O -0.561 6.561 9 N -0.691 5.691 10 C 0.118 3.882 11 C 0.114 3.886 12 N -0.651 5.651 13 C -0.285 4.285 14 H 0.057 0.943 15 C -0.078 4.078 16 N -0.969 5.969 17 Si 1.095 2.905 18 H -0.288 1.288 19 H -0.252 1.252 20 H -0.305 1.305 21 C 0.078 3.922 22 C -0.071 4.071 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.120 0.880 26 H 0.200 0.800 27 H 0.406 0.594 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.249 0.751 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 -17.284 -9.374 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.033 3.967 4 C -0.464 4.464 5 S 0.527 5.473 6 C -0.386 4.386 7 C 0.381 3.619 8 O -0.442 6.442 9 N -0.340 5.340 10 C 0.012 3.988 11 C -0.011 4.011 12 N -0.380 5.380 13 C -0.413 4.413 14 H 0.075 0.925 15 C -0.271 4.271 16 N -0.615 5.615 17 Si 0.922 3.078 18 H -0.215 1.215 19 H -0.177 1.177 20 H -0.233 1.233 21 C -0.048 4.048 22 C -0.107 4.107 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.138 0.862 26 H 0.217 0.783 27 H 0.242 0.758 28 H 0.146 0.854 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.356 -16.509 -7.752 20.498 hybrid contribution -0.921 -0.181 -1.330 1.628 sum -10.276 -16.690 -9.082 21.602 Atomic orbital electron populations 1.23359 0.76115 1.05718 1.02309 1.86097 1.23467 1.24709 1.89562 1.17484 0.91137 0.85591 1.02512 1.25448 1.07126 0.96674 1.17151 1.83236 0.91610 1.05525 1.66905 1.24272 0.97554 0.98488 1.18272 1.17063 0.86958 0.82236 0.75647 1.90785 1.47835 1.53571 1.52010 1.45383 1.08869 1.06243 1.73458 1.22332 0.82915 0.96541 0.97012 1.22944 1.00520 0.88810 0.88868 1.46392 1.74321 1.13002 1.04314 1.19987 1.33961 0.94483 0.92881 0.92476 1.26802 1.01678 1.02054 0.96596 1.71002 1.32455 1.21159 1.36864 0.83378 0.76428 0.73604 0.74435 1.21513 1.17694 1.23266 1.23435 0.98660 0.85511 0.97181 1.20024 0.93799 0.96507 1.00356 0.91823 0.91533 0.86190 0.78297 0.75795 0.85438 0.92164 0.90488 0.94189 0.90956 0.94141 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.93 113.37 1.13 1.33 16 2 O -0.32 -6.55 10.56 -95.91 -1.01 -7.56 16 3 C 0.09 1.99 6.61 21.20 0.14 2.13 16 4 C -0.33 -6.12 9.81 66.87 0.66 -5.46 16 5 S 0.26 5.74 22.15 -56.49 -1.25 4.49 16 6 C -0.27 -7.32 6.45 24.09 0.16 -7.17 16 7 C 0.59 19.34 7.78 86.41 0.67 20.02 16 8 O -0.56 -21.03 16.43 -4.38 -0.07 -21.10 16 9 N -0.69 -22.34 5.39 -445.61 -2.40 -24.75 16 10 C 0.12 3.92 4.61 45.55 0.21 4.13 16 11 C 0.11 3.94 8.44 83.17 0.70 4.65 16 12 N -0.65 -29.67 3.62 -738.11 -2.67 -32.35 16 13 C -0.29 -15.88 11.03 84.03 0.93 -14.96 16 14 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 15 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 16 N -0.97 -61.56 13.70 21.65 0.30 -61.26 16 17 Si 1.09 53.51 25.50 68.60 1.75 55.26 16 18 H -0.29 -13.66 6.97 99.48 0.69 -12.96 16 19 H -0.25 -10.98 5.66 99.48 0.56 -10.41 16 20 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 21 C 0.08 3.12 5.43 83.26 0.45 3.57 16 22 C -0.07 -1.84 10.00 21.80 0.22 -1.62 16 23 H 0.06 0.58 7.84 -2.39 -0.02 0.56 16 24 H 0.07 0.56 7.84 -2.38 -0.02 0.54 16 25 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.20 2.46 6.96 -2.91 -0.02 2.44 16 27 H 0.41 12.89 7.87 -92.71 -0.73 12.16 16 28 H 0.13 3.81 7.45 -2.38 -0.02 3.79 16 29 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.25 15.75 8.73 -92.71 -0.81 14.94 16 32 H 0.07 2.70 7.02 -2.39 -0.02 2.69 16 33 H 0.04 1.75 6.22 -2.38 -0.01 1.73 16 34 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -71.89 303.19 0.57 -71.32 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.21 Total: 13.47 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.73 Total: 2.48 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -4.78 Total: -118.36 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.09 Total: -28.67 kcal Atomic # 14 Polarization: 53.51 SS G_CDS: 1.75 Total: 55.26 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.25 Total: 4.49 kcal Total: -71.89 0.57 -71.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030780322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.060 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds