Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35787 * 116.99791 * 2 1 4 4 C 1.38020 * 123.47292 * 359.97438 * 3 2 1 5 5 C 1.33607 * 115.08522 * 180.02562 * 4 3 2 6 6 S 1.70580 * 111.14802 * 359.97438 * 5 4 3 7 7 C 1.37273 * 123.46965 * 179.97438 * 3 2 1 8 8 C 1.41723 * 125.47190 * 359.97114 * 7 3 2 9 9 O 1.21774 * 120.00532 * 359.97438 * 8 7 3 10 10 N 1.34785 * 119.99540 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99812 * 179.97438 * 10 8 7 12 12 C 1.53946 * 113.74306 * 253.73680 * 11 10 8 13 13 N 1.47807 * 86.03733 * 222.08551 * 12 11 10 14 14 C 1.36936 * 134.45583 * 204.63985 * 13 12 11 15 15 H 1.08001 * 120.00607 * 173.34677 * 14 13 12 16 16 C 1.38818 * 120.00097 * 353.35244 * 14 13 12 17 17 N 1.31623 * 119.99926 * 5.05651 * 16 14 13 18 18 Si 1.86800 * 120.00255 * 185.06403 * 16 14 13 19 19 H 1.48497 * 109.47539 * 94.98403 * 18 16 14 20 20 H 1.48500 * 109.46885 * 214.98787 * 18 16 14 21 21 H 1.48504 * 109.46881 * 334.98472 * 18 16 14 22 22 C 1.47579 * 91.05134 * 24.55022 * 13 12 11 23 23 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47210 * 299.99854 * 1 2 3 25 25 H 1.09004 * 109.47078 * 59.99825 * 1 2 3 26 26 H 1.08006 * 122.45430 * 0.02562 * 4 3 2 27 27 H 1.08006 * 124.42869 * 180.27193 * 5 4 3 28 28 H 0.96998 * 119.99828 * 359.97438 * 10 8 7 29 29 H 1.08999 * 112.94614 * 25.33075 * 11 10 8 30 30 H 1.09002 * 113.76703 * 336.35202 * 12 11 10 31 31 H 1.08995 * 113.77379 * 107.74082 * 12 11 10 32 32 H 0.96993 * 119.99713 * 180.02562 * 17 16 14 33 33 H 1.09004 * 113.76677 * 221.15306 * 22 13 12 34 34 H 1.08997 * 113.77488 * 89.75625 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4108 -0.0005 5 6 2.1388 3.5001 -0.0010 6 16 3.7923 3.0805 -0.0001 7 6 3.4094 1.3646 0.0005 8 6 4.3567 0.3105 0.0017 9 8 3.9793 -0.8473 0.0028 10 7 5.6753 0.5895 0.0016 11 6 6.6545 -0.5001 0.0033 12 6 7.3621 -0.6953 1.3566 13 7 8.5987 -0.8767 0.5676 14 6 9.7902 -1.5156 0.7853 15 1 10.5152 -1.5927 -0.0115 16 6 10.0663 -2.0642 2.0302 17 7 9.1455 -2.0586 2.9707 18 14 11.7446 -2.8103 2.3708 19 1 12.6151 -1.7962 3.0182 20 1 11.5924 -3.9803 3.2726 21 1 12.3606 -3.2476 1.0922 22 6 8.0332 -0.0953 -0.5493 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.2865 2.4659 -0.0005 27 1 1.7662 4.5138 0.0028 28 1 5.9759 1.5118 0.0003 29 1 6.2639 -1.4232 -0.4249 30 1 7.3672 0.1971 1.9825 31 1 7.0461 -1.5903 1.8925 32 1 9.3386 -2.4416 3.8407 33 1 8.2521 -0.5122 -1.5324 34 1 8.2358 0.9737 -0.4846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031289664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = 0.817684 kcal Electronic energy + Delta-G solvation = -19367.598938 eV Core-core repulsion = 16201.053868 eV Total energy + Delta-G solvation = -3166.545070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38599 -40.45790 -39.03408 -36.91737 -35.13330 -33.80661 -31.28390 -29.42678 -27.90835 -26.64529 -25.99942 -24.77703 -22.50884 -21.44406 -20.53339 -19.65058 -18.77367 -17.99951 -17.24876 -17.00484 -16.87834 -16.66968 -15.86012 -15.83124 -15.64518 -14.85884 -14.63291 -14.60425 -13.79714 -13.71737 -13.40395 -13.28519 -13.23397 -12.81591 -12.65349 -12.48323 -12.30237 -12.00373 -11.95244 -11.89817 -11.52291 -11.01749 -10.88659 -10.09960 -9.72177 -9.04740 -8.97852 -7.93389 -5.28748 -0.48652 0.46485 0.86267 1.36544 1.45654 1.48564 1.57830 2.20643 2.28795 2.51687 2.54653 3.23306 3.39935 3.74218 3.84695 4.08622 4.18643 4.31881 4.38834 4.39875 4.50922 4.65484 4.72577 4.72896 4.88906 4.89238 5.11471 5.18420 5.20449 5.46303 5.68296 5.87123 6.30545 6.59437 6.86677 7.28616 7.56870 8.50884 9.24411 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.003662 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.342090 B = 7644.394571 C = 8086.182675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.182 3.818 4 C -0.224 4.224 5 C -0.171 4.171 6 S 0.264 5.736 7 C -0.378 4.378 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.707 5.707 11 C 0.120 3.880 12 C 0.156 3.844 13 N -0.637 5.637 14 C -0.238 4.238 15 H 0.092 0.908 16 C -0.069 4.069 17 N -0.955 5.955 18 Si 0.985 3.015 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.124 3.876 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.180 0.820 27 H 0.217 0.783 28 H 0.407 0.593 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.067 0.933 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.695 16.442 -8.020 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.224 6.224 3 C 0.120 3.880 4 C -0.256 4.256 5 C -0.309 4.309 6 S 0.529 5.471 7 C -0.498 4.498 8 C 0.378 3.622 9 O -0.463 6.463 10 N -0.359 5.359 11 C 0.013 3.987 12 C 0.029 3.971 13 N -0.364 5.364 14 C -0.366 4.366 15 H 0.110 0.890 16 C -0.262 4.262 17 N -0.604 5.604 18 Si 0.812 3.188 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.187 1.187 22 C -0.002 4.002 23 H 0.126 0.874 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.198 0.802 27 H 0.234 0.766 28 H 0.243 0.757 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.289 16.070 -7.876 24.884 hybrid contribution -0.576 -1.117 0.717 1.447 sum -17.866 14.953 -7.160 24.373 Atomic orbital electron populations 1.23483 0.75934 1.05561 1.03065 1.86311 1.23682 1.25600 1.86809 1.18812 0.90357 0.86493 0.92340 1.20229 1.03612 0.89475 1.12322 1.25604 0.98005 1.05272 1.02007 1.82862 1.04566 0.91780 1.67897 1.22798 0.95496 1.00240 1.31244 1.16095 0.82281 0.88014 0.75767 1.90825 1.80305 1.22614 1.52519 1.45749 1.04940 1.09894 1.75273 1.23198 0.86968 0.90722 0.97778 1.22519 0.84198 0.97334 0.93010 1.46015 1.14353 1.59154 1.16912 1.19470 0.92654 1.27895 0.96573 0.88987 1.25783 1.01985 1.02600 0.95801 1.70073 1.34406 1.51262 1.04635 0.84971 0.78777 0.77064 0.77974 1.21080 1.22325 1.18731 1.23006 0.88248 0.96221 0.92706 0.87370 0.90765 0.90465 0.80247 0.76587 0.75697 0.89107 0.95608 0.95392 0.94218 0.91449 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.94 113.37 1.13 1.35 16 2 O -0.31 -9.18 9.36 -74.41 -0.70 -9.87 16 3 C 0.18 4.78 6.70 21.99 0.15 4.93 16 4 C -0.22 -3.51 9.17 21.17 0.19 -3.32 16 5 C -0.17 -2.01 10.90 66.77 0.73 -1.28 16 6 S 0.26 4.56 22.00 -56.49 -1.24 3.32 16 7 C -0.38 -11.09 6.28 22.90 0.14 -10.94 16 8 C 0.59 22.53 7.60 85.10 0.65 23.18 16 9 O -0.58 -27.81 15.46 12.17 0.19 -27.62 16 10 N -0.71 -24.97 5.36 -456.27 -2.45 -27.42 16 11 C 0.12 5.13 4.40 46.75 0.21 5.33 16 12 C 0.16 8.20 7.24 86.44 0.63 8.82 16 13 N -0.64 -34.27 3.70 -716.72 -2.65 -36.93 16 14 C -0.24 -13.77 10.70 84.04 0.90 -12.88 16 15 H 0.09 4.99 7.83 -2.91 -0.02 4.97 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.96 -60.66 11.51 21.65 0.25 -60.42 16 18 Si 0.98 46.91 29.56 68.60 2.03 48.94 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.12 5.04 8.69 86.49 0.75 5.79 16 23 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 0.87 7.88 -2.39 -0.02 0.85 16 25 H 0.08 0.85 7.88 -2.38 -0.02 0.83 16 26 H 0.18 1.59 6.99 -2.91 -0.02 1.57 16 27 H 0.22 0.64 8.06 -2.91 -0.02 0.62 16 28 H 0.41 11.51 7.68 -92.71 -0.71 10.79 16 29 H 0.09 4.30 7.50 -2.39 -0.02 4.28 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.69 7.37 -2.39 -0.02 1.67 16 32 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.07 2.35 8.11 -2.39 -0.02 2.33 16 Total: -1.00 -83.61 307.43 1.78 -81.82 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.42 Total: 10.78 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.94 Total: 17.39 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -4.85 Total: -124.76 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.51 Total: -37.49 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.24 Total: 3.32 kcal Total: -83.61 1.78 -81.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031289664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.641 kcal (2) G-P(sol) polarization free energy of solvation -83.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds