Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08996 * 112.84787 * 25.32815 * 10 9 7 12 12 C 1.53780 * 113.61139 * 156.53173 * 10 9 7 13 13 C 1.53791 * 87.08107 * 139.98168 * 12 10 9 14 14 H 1.08991 * 113.61367 * 89.11216 * 13 12 10 15 15 C 1.52994 * 113.61185 * 219.93458 * 13 12 10 16 16 N 1.46502 * 109.47343 * 184.99938 * 15 13 12 17 17 C 1.34774 * 120.00445 * 180.02562 * 16 15 13 18 18 O 1.21619 * 119.99953 * 359.97438 * 17 16 15 19 19 C 1.47170 * 120.00168 * 180.02562 * 17 16 15 20 20 C 1.38244 * 128.47891 * 179.70222 * 19 17 16 21 21 N 1.31243 * 111.89013 * 179.80933 * 20 19 17 22 22 N 1.27337 * 120.03567 * 0.53283 * 21 20 19 23 23 S 1.56634 * 109.74303 * 359.69118 * 22 21 20 24 24 C 1.53791 * 113.61264 * 254.13455 * 10 9 7 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08999 * 113.60991 * 254.52215 * 12 10 9 28 28 H 1.08995 * 113.62121 * 25.42967 * 12 10 9 29 29 H 1.09007 * 109.47044 * 304.99772 * 15 13 12 30 30 H 1.08997 * 109.47759 * 64.99461 * 15 13 12 31 31 H 0.97007 * 119.99533 * 359.97438 * 16 15 13 32 32 H 1.07996 * 124.05464 * 359.97360 * 20 19 17 33 33 H 1.09000 * 113.61165 * 334.57015 * 24 10 9 34 34 H 1.08997 * 113.61059 * 105.47100 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 3.0558 -3.5716 0.4167 12 6 1.2466 -4.8394 0.5415 13 6 1.8604 -5.6874 -0.5851 14 1 2.8047 -6.1582 -0.3122 15 6 0.8720 -6.6647 -1.2245 16 7 1.5756 -7.5045 -2.1970 17 6 0.9013 -8.4447 -2.8882 18 8 -0.2913 -8.5963 -2.7042 19 6 1.6083 -9.2888 -3.8647 20 6 1.0972 -10.2993 -4.6577 21 7 2.0206 -10.8389 -5.4183 22 7 3.2220 -10.4215 -5.3556 23 16 3.3256 -9.2632 -4.3063 24 6 2.0323 -4.3757 -1.3727 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 1.5551 -5.1504 1.5396 28 1 0.1681 -4.7093 0.4521 29 1 0.4324 -7.2947 -0.4512 30 1 0.0840 -6.1062 -1.7296 31 1 2.5268 -7.3834 -2.3441 32 1 0.0617 -10.6059 -4.6538 33 1 1.1690 -4.1185 -1.9864 34 1 2.9742 -4.3129 -1.9177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086035526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = 67.831725 kcal Electronic energy + Delta-G solvation = -18651.078278 eV Core-core repulsion = 15519.731905 eV Total energy + Delta-G solvation = -3131.346372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21982 -39.91142 -38.52347 -34.96823 -33.40851 -32.50745 -30.38667 -28.57869 -26.95963 -25.18285 -24.10297 -23.04498 -21.24870 -20.89955 -19.69527 -19.09244 -17.77711 -17.08542 -16.36622 -16.32531 -15.52357 -15.29972 -14.88879 -14.72662 -14.30593 -13.67455 -13.45115 -13.10732 -13.02161 -12.39925 -12.01863 -11.91666 -11.49255 -11.31036 -10.87427 -10.75819 -10.64353 -10.50757 -10.49558 -10.26451 -10.24534 -10.13229 -9.90324 -9.58730 -9.30752 -8.91366 -7.01452 -5.82351 -3.11558 -0.68253 0.38329 1.05893 1.57533 2.63502 2.67789 3.40256 3.44925 3.46061 3.61411 4.27252 4.34986 4.54256 4.83283 4.87139 5.11110 5.17489 5.37879 5.41494 5.67607 5.70907 5.83462 5.99570 6.02855 6.20196 6.26125 6.31401 6.51050 6.73212 7.01918 7.04020 7.22733 7.64512 7.71392 8.36154 9.47247 10.04930 10.38930 11.39903 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.002818 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.846600 B = 9932.787151 C =10284.210164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.141 4.141 13 C -0.130 4.130 14 H 0.090 0.910 15 C 0.131 3.869 16 N -0.713 5.713 17 C 0.597 3.403 18 O -0.516 6.516 19 C -0.283 4.283 20 C 0.073 3.927 21 N -0.252 5.252 22 N -0.257 5.257 23 S 0.424 5.576 24 C -0.163 4.163 25 H 0.257 0.743 26 H 0.385 0.615 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.217 0.783 33 H 0.079 0.921 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 -19.719 -5.705 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.181 4.181 13 C -0.149 4.149 14 H 0.108 0.892 15 C 0.009 3.991 16 N -0.364 5.364 17 C 0.380 3.620 18 O -0.393 6.393 19 C -0.425 4.425 20 C -0.094 4.094 21 N -0.116 5.116 22 N -0.238 5.238 23 S 0.558 5.442 24 C -0.204 4.204 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.233 0.767 33 H 0.098 0.902 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.088 -19.947 -6.332 22.096 hybrid contribution -0.848 0.968 0.230 1.307 sum 6.240 -18.980 -6.103 20.890 Atomic orbital electron populations 1.69647 1.05157 1.25933 1.57245 1.24773 0.95521 0.97816 1.02723 0.86265 0.78549 0.83480 0.77862 1.21226 1.21666 1.21212 1.19246 0.91034 0.84234 1.43233 0.91139 1.42404 1.05765 0.99868 1.87040 1.21511 0.95286 0.85091 0.92743 0.90684 1.23432 1.01004 0.96971 0.96645 1.22705 0.98447 0.94465 0.99265 0.89185 1.21598 0.95199 0.91882 0.90421 1.45963 1.12805 1.35915 1.41745 1.16489 0.86203 0.79682 0.79646 1.90873 1.13727 1.68979 1.65692 1.28147 0.99626 1.06396 1.08296 1.24500 1.02105 0.91954 0.90845 1.70712 0.94463 1.24758 1.21651 1.78890 1.15614 1.11654 1.17668 1.82656 1.05889 1.28912 1.26712 1.24016 1.01428 0.94620 1.00319 0.93349 0.78044 0.91837 0.89976 0.91026 0.90504 0.76573 0.76696 0.90234 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.13 5.41 -52.63 -0.28 -17.41 16 10 C 0.17 3.00 4.47 -67.11 -0.30 2.70 16 11 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 12 C -0.14 -2.03 7.39 -25.91 -0.19 -2.22 16 13 C -0.13 -1.50 3.75 -89.71 -0.34 -1.84 16 14 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.13 1.47 5.52 -4.04 -0.02 1.44 16 16 N -0.71 -6.79 5.55 -61.47 -0.34 -7.13 16 17 C 0.60 6.53 7.80 -12.64 -0.10 6.44 16 18 O -0.52 -7.45 16.98 5.26 0.09 -7.36 16 19 C -0.28 -2.53 6.81 -35.95 -0.25 -2.77 16 20 C 0.07 0.65 11.55 -17.80 -0.21 0.44 16 21 N -0.25 -2.61 11.54 30.36 0.35 -2.26 16 22 N -0.26 -2.56 12.51 60.35 0.75 -1.81 16 23 S 0.42 3.00 23.05 -107.50 -2.48 0.52 16 24 C -0.16 -2.44 7.45 -25.82 -0.19 -2.64 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.39 9.89 7.91 -40.82 -0.32 9.57 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 31 H 0.40 2.82 7.90 -40.82 -0.32 2.50 16 32 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.08 1.34 7.91 -51.93 -0.41 0.93 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -32.15 313.70 -7.28 -39.43 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.96 Total: 7.03 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.84 Total: -5.67 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 1.20 Total: -55.53 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.48 Total: 0.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.15 -7.28 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086035526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.262 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds