Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48500 * 109.46836 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.47225 * 29.99936 * 3 2 1 6 6 H 1.48503 * 109.46549 * 149.99965 * 3 2 1 7 7 C 1.38811 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00061 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 C 1.52998 * 113.68747 * 220.07804 * 13 12 10 16 16 N 1.46499 * 109.46882 * 272.53320 * 15 13 12 17 17 C 1.34783 * 119.99918 * 180.02562 * 16 15 13 18 18 O 1.21566 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.47750 * 120.00426 * 180.02562 * 17 16 15 20 20 C 1.39349 * 124.11996 * 179.72432 * 19 17 16 21 21 N 1.30093 * 112.14483 * 179.84385 * 20 19 17 22 22 S 1.55919 * 108.75512 * 0.40791 * 21 20 19 23 23 N 1.31491 * 124.11206 * 0.02562 * 19 17 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 25 25 H 0.96993 * 120.00080 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 28 28 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 29 29 H 1.08995 * 109.47742 * 32.53801 * 15 13 12 30 30 H 1.09003 * 109.47049 * 152.53819 * 15 13 12 31 31 H 0.96999 * 120.00576 * 0.02562 * 16 15 13 32 32 H 1.07995 * 123.92400 * 0.02562 * 20 19 17 33 33 H 1.09002 * 113.61445 * 139.98212 * 24 13 12 34 34 H 1.09002 * 113.61408 * 270.79943 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 1 3.5282 -3.2976 0.4068 12 6 4.7899 -2.7944 -1.3418 13 6 5.9873 -3.3087 -0.5254 14 1 5.9170 -4.3649 -0.2652 15 6 7.3451 -2.9329 -1.1221 16 7 7.7502 -3.9516 -2.0939 17 6 8.9214 -3.8294 -2.7497 18 8 9.6417 -2.8741 -2.5344 19 6 9.3298 -4.8564 -3.7301 20 6 10.5167 -4.8131 -4.4590 21 7 10.6429 -5.8367 -5.2519 22 16 9.3872 -6.7481 -5.0977 23 7 8.6148 -5.9198 -4.0253 24 6 5.5259 -2.3655 0.5982 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3622 0.0014 27 1 5.0158 -1.9110 -1.9391 28 1 4.2837 -3.5730 -1.9124 29 1 7.2683 -1.9662 -1.6197 30 1 8.0878 -2.8739 -0.3265 31 1 7.1756 -4.7141 -2.2654 32 1 11.2482 -4.0233 -4.3732 33 1 5.6129 -2.7982 1.5948 34 1 5.9541 -1.3654 0.5320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086037007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = 57.114610 kcal Electronic energy + Delta-G solvation = -18790.180431 eV Core-core repulsion = 15658.369329 eV Total energy + Delta-G solvation = -3131.811101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46408 -39.53198 -38.48413 -35.01816 -33.99683 -33.26732 -30.79245 -28.58487 -27.05345 -25.23054 -24.01920 -22.98294 -21.05896 -20.67104 -19.78172 -19.38028 -17.94515 -17.43936 -16.48313 -16.16721 -15.78197 -15.30018 -14.95556 -14.58686 -14.27296 -13.78510 -13.33996 -12.72548 -12.64956 -12.26023 -12.00681 -11.86254 -11.68605 -11.63158 -11.56523 -11.44659 -10.92759 -10.58192 -10.50937 -10.17101 -10.12025 -9.86732 -9.65170 -9.57201 -9.20446 -8.91253 -7.29163 -5.80210 -3.15918 0.01404 0.97105 1.16483 1.21029 2.81600 2.85090 3.36185 3.39236 3.44257 4.08232 4.46337 4.56561 4.70352 4.81516 4.82711 5.07001 5.07750 5.35662 5.38625 5.59109 5.66647 5.75792 5.78803 5.96970 6.08727 6.15080 6.19116 6.28622 6.47867 6.64576 6.94749 7.22424 7.83808 7.96172 8.39648 9.17367 9.90064 10.09725 11.38021 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.002877 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.276750 B = 9731.164939 C = 9943.794141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.092 0.908 15 C 0.130 3.870 16 N -0.701 5.701 17 C 0.601 3.399 18 O -0.526 6.526 19 C 0.013 3.987 20 C 0.090 3.910 21 N -0.579 5.579 22 S 0.720 5.280 23 N -0.546 5.546 24 C -0.144 4.144 25 H 0.260 0.740 26 H 0.363 0.637 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.410 0.590 32 H 0.215 0.785 33 H 0.066 0.934 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.126 -14.343 -8.098 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.203 4.203 13 C -0.147 4.147 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.352 5.352 17 C 0.380 3.620 18 O -0.401 6.401 19 C -0.162 4.162 20 C -0.104 4.104 21 N -0.420 5.420 22 S 0.762 5.238 23 N -0.396 5.396 24 C -0.184 4.184 25 H 0.070 0.930 26 H 0.196 0.804 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.858 -15.484 -8.871 27.450 hybrid contribution 0.740 2.400 0.622 2.587 sum 21.597 -13.085 -8.249 26.565 Atomic orbital electron populations 1.69703 1.05141 1.25908 1.57299 1.24702 0.95265 0.97299 1.01866 0.86550 0.79245 0.84919 0.77835 1.21042 1.21691 1.20233 1.19138 0.80695 0.94770 1.43247 0.89133 1.42760 1.04096 1.02024 1.88762 1.21527 0.89518 0.90048 0.92850 0.89778 1.23960 0.95922 1.00555 0.99820 1.22648 0.92867 1.00077 0.99098 0.88943 1.21569 0.95996 0.90941 0.90728 1.45881 1.20238 1.27476 1.41622 1.16758 0.81997 0.83561 0.79670 1.90845 1.53140 1.31105 1.65041 1.22583 0.94295 0.95718 1.03624 1.23800 0.97842 0.97021 0.91733 1.72270 1.30484 1.11507 1.27696 1.79119 0.96275 1.25655 1.22788 1.72454 1.35828 1.11271 1.20075 1.23471 0.98902 0.98945 0.97104 0.93011 0.80429 0.90415 0.92210 0.90766 0.91122 0.75408 0.76872 0.91553 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.03 5.21 -52.54 -0.27 -17.30 16 10 C 0.17 3.10 4.49 -67.02 -0.30 2.80 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.16 -2.47 7.44 -25.82 -0.19 -2.66 16 13 C -0.13 -1.54 3.75 -89.81 -0.34 -1.88 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.52 5.51 -4.04 -0.02 1.50 16 16 N -0.70 -7.66 5.55 -61.28 -0.34 -8.00 16 17 C 0.60 7.14 7.82 -12.37 -0.10 7.04 16 18 O -0.53 -7.59 16.80 5.31 0.09 -7.51 16 19 C 0.01 0.13 6.81 -83.71 -0.57 -0.44 16 20 C 0.09 0.80 11.22 -17.87 -0.20 0.59 16 21 N -0.58 -5.03 11.41 19.42 0.22 -4.81 16 22 S 0.72 4.82 23.69 -107.50 -2.55 2.27 16 23 N -0.55 -4.98 11.00 23.18 0.26 -4.73 16 24 C -0.14 -2.06 7.39 -25.92 -0.19 -2.25 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.36 8.26 5.78 -40.82 -0.24 8.02 16 27 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 3.98 8.06 -40.82 -0.33 3.65 16 32 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -32.97 309.26 -7.97 -40.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.93 Total: 7.93 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.16 Total: -2.33 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.64 Total: -63.23 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -2.55 Total: 2.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.97 -7.97 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086037007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.054 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds