Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47091 * 2 1 4 4 C 1.50707 * 109.46812 * 239.99929 * 2 1 3 5 5 H 1.07999 * 119.99736 * 239.99759 * 4 2 1 6 6 C 1.37872 * 119.99848 * 60.00270 * 4 2 1 7 7 N 1.31514 * 120.00249 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99960 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47027 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46877 * 119.99939 * 8 6 4 11 11 H 1.48497 * 109.47242 * 239.99931 * 8 6 4 12 12 N 1.46500 * 109.47344 * 120.00508 * 2 1 3 13 13 C 1.34781 * 119.99709 * 275.00135 * 12 2 1 14 14 O 1.21286 * 120.00065 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00207 * 180.02562 * 13 12 2 16 16 S 1.81399 * 109.47271 * 179.97438 * 15 13 12 17 17 C 1.76206 * 102.99894 * 179.97438 * 16 15 13 18 18 C 1.39078 * 119.70774 * 15.83886 * 17 16 15 19 19 C 1.38355 * 119.11104 * 179.97438 * 18 17 16 20 20 C 1.38847 * 118.52101 * 0.02562 * 19 18 17 21 21 C 1.38099 * 119.33447 * 359.97438 * 20 19 18 22 22 N 1.32004 * 120.84386 * 359.71972 * 21 20 19 23 23 O 1.41596 * 119.19835 * 180.27467 * 22 21 20 24 24 H 1.08995 * 109.47409 * 59.99679 * 1 2 3 25 25 H 1.09008 * 109.47569 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47306 * 299.99682 * 1 2 3 27 27 H 0.96991 * 120.00296 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00461 * 94.99855 * 12 2 1 29 29 H 1.09005 * 109.47207 * 59.99614 * 15 13 12 30 30 H 1.09001 * 109.46756 * 299.99739 * 15 13 12 31 31 H 1.08004 * 120.44274 * 359.97131 * 18 17 16 32 32 H 1.08000 * 120.74196 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.32954 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.57741 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1471 -2.2864 -3.6038 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6500 -0.7286 3.5874 16 16 2.7115 0.4371 4.9759 17 6 3.3114 -0.5568 6.3015 18 6 3.9066 -1.7838 6.0284 19 6 4.3737 -2.5539 7.0786 20 6 4.2289 -2.0694 8.3717 21 6 3.6279 -0.8421 8.5710 22 7 3.1968 -0.1258 7.5495 23 8 2.5910 1.1306 7.7935 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7081 1.1609 -3.4843 28 1 2.2490 -1.6318 1.1525 29 1 3.6493 -1.1204 3.3978 30 1 1.9778 -1.5510 3.8325 31 1 4.0027 -2.1308 5.0102 32 1 4.8399 -3.5110 6.8968 33 1 4.5827 -2.6465 9.2132 34 1 3.5137 -0.4612 9.5752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116044491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = 28.406060 kcal Electronic energy + Delta-G solvation = -18812.770510 eV Core-core repulsion = 15647.421761 eV Total energy + Delta-G solvation = -3165.348748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29521 -39.02256 -34.97842 -34.84977 -32.65034 -32.31665 -30.46907 -29.88980 -28.18953 -25.33092 -24.71435 -24.39596 -21.50475 -19.73035 -18.97252 -17.73392 -17.17032 -16.97555 -16.06558 -15.82179 -15.53646 -15.26157 -15.21370 -14.92532 -14.20511 -14.03934 -13.15313 -12.77835 -12.61491 -12.45820 -12.35647 -11.74724 -11.52388 -11.15891 -11.02956 -10.82305 -10.63469 -10.38428 -10.31595 -10.24980 -9.38727 -9.31528 -9.13016 -8.80028 -8.64560 -8.10913 -7.73561 -6.19492 -4.29831 0.13981 0.32141 0.81234 2.05218 2.43694 2.77097 3.06760 3.18951 3.26667 3.28795 3.80347 4.05020 4.19665 4.21946 4.28871 4.39756 4.76311 4.88223 4.97080 5.13069 5.21014 5.27681 5.43032 5.49649 6.42823 6.73949 6.86838 6.87627 7.05464 7.29077 7.41989 7.59186 7.81072 8.06217 8.45321 8.65008 8.90049 9.37673 10.86499 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.003251 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.149789 B = 8610.380282 C = 9167.862223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.699 5.699 13 C 0.521 3.479 14 O -0.533 6.533 15 C -0.185 4.185 16 S 0.110 5.890 17 C 0.059 3.941 18 C -0.146 4.146 19 C -0.059 4.059 20 C -0.142 4.142 21 C 0.092 3.908 22 N -0.115 5.115 23 O -0.533 6.533 24 H 0.092 0.908 25 H 0.027 0.973 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.391 0.609 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -12.775 17.451 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.347 5.347 13 C 0.302 3.698 14 O -0.411 6.411 15 C -0.337 4.337 16 S 0.353 5.647 17 C -0.179 4.179 18 C -0.173 4.173 19 C -0.086 4.086 20 C -0.165 4.165 21 C -0.056 4.056 22 N 0.202 4.798 23 O -0.588 6.588 24 H 0.110 0.890 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.223 0.777 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.254 -10.161 17.230 21.278 hybrid contribution 0.785 -2.302 -0.713 2.534 sum 8.039 -12.463 16.518 22.199 Atomic orbital electron populations 1.22097 0.98203 0.99250 1.01185 1.18847 0.91212 0.94103 0.79528 0.93059 1.21214 1.32736 1.13360 0.90192 0.91944 1.24895 0.94747 0.94934 0.99123 1.69904 1.35615 1.22349 1.23962 0.86371 0.78619 0.79473 0.82487 1.19745 1.20829 1.20809 1.46470 1.64688 1.13622 1.09957 1.19250 0.79528 0.87330 0.83656 1.90751 1.50622 1.15414 1.84282 1.24326 1.06948 1.04039 0.98353 1.87632 1.76559 1.07111 0.93403 1.23825 1.02515 0.99118 0.92407 1.21884 1.00035 0.93014 1.02322 1.21695 0.95238 0.99803 0.91826 1.21756 1.00507 0.95247 0.99009 1.22664 0.95812 0.92025 0.95054 1.43029 1.21007 1.14465 1.01318 1.97663 1.68111 0.99532 1.93453 0.88950 0.95369 0.96462 0.92482 0.77679 0.86585 0.86378 0.82218 0.82818 0.82014 0.79976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.47 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.70 -13.38 5.07 -54.93 -0.28 -13.66 16 13 C 0.52 9.66 7.81 -10.98 -0.09 9.57 16 14 O -0.53 -12.45 15.53 5.55 0.09 -12.37 16 15 C -0.18 -2.31 5.12 36.01 0.18 -2.13 16 16 S 0.11 1.73 20.27 -107.50 -2.18 -0.45 16 17 C 0.06 0.75 6.93 -16.94 -0.12 0.63 16 18 C -0.15 -1.13 9.38 -39.23 -0.37 -1.50 16 19 C -0.06 -0.29 10.17 -39.31 -0.40 -0.68 16 20 C -0.14 -0.70 10.11 -39.41 -0.40 -1.09 16 21 C 0.09 0.83 10.69 -17.53 -0.19 0.65 16 22 N -0.11 -1.67 3.60 -12.09 -0.04 -1.71 16 23 O -0.53 -11.30 19.21 -11.47 -0.22 -11.52 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 6.10 8.54 -40.82 -0.35 5.75 16 29 H 0.12 1.04 7.09 -51.92 -0.37 0.67 16 30 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.16 0.84 5.97 -52.48 -0.31 0.52 16 32 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 33 H 0.16 0.16 8.06 -52.49 -0.42 -0.26 16 34 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -37.95 311.80 -7.75 -45.69 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.82 Total: 1.85 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.60 Total: -3.82 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.31 Total: -39.07 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.13 Total: -23.89 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.18 Total: -0.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.95 -7.75 -45.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116044491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.099 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds