Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.92001 * 2 1 4 4 C 1.38444 * 120.27984 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.94344 * 180.02562 * 4 3 2 6 6 C 1.38105 * 120.12030 * 359.97438 * 4 3 2 7 7 C 1.39546 * 119.83435 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.13788 * 179.97438 * 7 6 4 9 9 O 1.21552 * 120.00330 * 180.02562 * 8 7 6 10 10 N 1.34785 * 119.99873 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47181 * 180.02562 * 11 10 8 13 13 N 1.46497 * 109.47181 * 180.02562 * 12 11 10 14 14 C 1.36934 * 119.99964 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00242 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47224 * 59.99677 * 18 16 14 20 20 H 1.48499 * 109.47361 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46891 * 300.00054 * 18 16 14 22 22 C 1.37943 * 119.92009 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46769 * 89.99428 * 1 2 3 24 24 H 1.08992 * 109.47332 * 209.99678 * 1 2 3 25 25 H 1.08998 * 109.46846 * 330.00252 * 1 2 3 26 26 H 1.07996 * 119.86026 * 0.02562 * 3 2 1 27 27 H 1.07989 * 120.08317 * 179.74454 * 6 4 3 28 28 H 0.97001 * 119.99514 * 0.02562 * 10 8 7 29 29 H 1.09007 * 109.46813 * 299.99878 * 11 10 8 30 30 H 1.08998 * 109.47122 * 59.99651 * 11 10 8 31 31 H 1.09002 * 109.46797 * 300.00247 * 12 11 10 32 32 H 1.08993 * 109.47199 * 59.99806 * 12 11 10 33 33 H 0.96996 * 120.00053 * 0.02562 * 13 12 11 34 34 H 0.96995 * 119.99794 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.06041 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2079 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2821 0.0177 0.0016 7 6 3.5910 -1.1946 0.0016 8 6 4.3342 -2.4727 0.0022 9 8 3.7297 -3.5273 0.0017 10 7 5.6820 -2.4685 0.0032 11 6 6.4184 -3.7349 0.0044 12 6 7.9218 -3.4507 0.0060 13 7 8.6582 -4.7172 0.0066 14 6 10.0275 -4.7129 0.0075 15 1 10.5647 -3.7759 0.0083 16 6 10.7254 -5.9129 0.0075 17 7 10.0708 -7.0548 0.0070 18 14 12.5934 -5.9072 0.0095 19 1 13.0849 -5.2063 1.2229 20 1 13.0927 -7.3056 0.0085 21 1 13.0874 -5.2048 -1.2020 22 6 2.1951 -1.1956 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6536 2.1324 0.0004 27 1 5.3620 0.0252 -0.0021 28 1 6.1644 -1.6269 0.0040 29 1 6.1562 -4.3069 0.8945 30 1 6.1575 -4.3077 -0.8855 31 1 8.1843 -2.8785 -0.8838 32 1 8.1823 -2.8782 0.8961 33 1 8.1758 -5.5587 0.0055 34 1 10.5584 -7.8933 0.0073 35 1 1.6548 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131362970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = -14.949558 kcal Electronic energy + Delta-G solvation = -18479.582656 eV Core-core repulsion = 15310.310161 eV Total energy + Delta-G solvation = -3169.272496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45846 -38.78472 -36.84781 -35.75060 -34.07534 -33.16585 -31.45494 -31.01199 -28.02555 -27.23598 -24.55858 -23.14024 -22.27628 -21.51321 -20.25681 -18.04495 -17.20882 -16.62218 -16.15590 -15.47271 -15.46143 -15.09037 -14.53230 -14.42516 -14.09333 -13.73289 -13.49378 -13.19510 -13.14876 -12.86896 -12.78194 -12.12735 -11.83580 -11.65663 -11.41054 -11.36461 -11.12066 -10.85148 -10.80557 -10.18585 -10.02970 -9.75225 -9.34435 -9.07507 -9.01252 -8.86308 -7.01176 -5.80566 -3.11541 0.42733 0.75643 1.71269 2.60075 3.10239 3.42421 3.46706 3.47980 3.48065 4.24015 4.31568 4.56804 4.68648 4.76610 4.82902 4.86926 5.18626 5.21420 5.32867 5.48531 5.48716 5.61103 5.68413 5.74208 5.84687 5.92551 6.01274 6.11404 6.29108 6.41400 6.67061 6.68761 7.49127 7.64443 8.16807 8.36995 9.48238 10.02451 10.37299 11.41957 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.002925 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.840089 B = 9571.488861 C =10644.581391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.038 4.038 5 Cl -0.064 7.064 6 C -0.085 4.085 7 C -0.110 4.110 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.110 3.890 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.246 4.246 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.058 4.058 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.399 0.601 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.905 19.678 -0.036 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.110 4.110 4 C -0.064 4.064 5 Cl -0.035 7.035 6 C -0.104 4.104 7 C -0.114 4.114 8 C 0.341 3.659 9 O -0.411 6.411 10 N -0.367 5.367 11 C -0.013 4.013 12 C 0.016 3.984 13 N -0.374 5.374 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.077 4.077 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.234 0.766 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.049 19.061 -0.034 26.948 hybrid contribution 1.358 0.286 -0.006 1.388 sum -17.691 19.346 -0.040 26.216 Atomic orbital electron populations 1.20823 0.89842 1.03458 1.02984 1.19857 0.96821 0.91934 0.99569 1.21119 0.91889 0.98886 0.99103 1.20757 0.92581 0.87276 1.05819 1.98392 1.77116 1.31048 1.96949 1.21233 1.00552 0.90181 0.98479 1.19968 0.94385 0.92642 1.04389 1.18085 0.82291 0.88407 0.77104 1.90797 1.68395 1.32204 1.49673 1.45873 1.05862 1.10656 1.74297 1.21647 0.92340 0.84458 1.02874 1.20760 0.87945 0.91204 0.98512 1.42169 1.03580 1.01939 1.89736 1.19147 0.82218 0.92639 1.43642 0.91062 1.24783 0.98152 0.95244 1.02593 1.69656 1.34513 0.96652 1.57063 0.86218 0.85195 0.76566 0.77880 1.21167 1.21593 1.21173 1.21304 0.92623 0.98770 0.94996 0.90550 0.90782 0.91075 0.84519 0.84347 0.76572 0.90951 0.90942 0.95732 0.95720 0.77967 0.93279 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.08 -0.66 5.87 -104.68 -0.61 -1.27 16 3 C -0.09 -0.72 9.47 -39.46 -0.37 -1.09 16 4 C -0.04 -0.34 6.31 -39.55 -0.25 -0.59 16 5 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 6 C -0.09 -0.83 9.32 -39.14 -0.36 -1.20 16 7 C -0.11 -1.27 5.87 -104.97 -0.62 -1.89 16 8 C 0.56 8.11 7.77 -12.32 -0.10 8.01 16 9 O -0.53 -9.68 16.35 5.32 0.09 -9.59 16 10 N -0.72 -9.91 5.51 -61.25 -0.34 -10.25 16 11 C 0.11 1.88 5.79 -4.04 -0.02 1.86 16 12 C 0.14 2.80 6.37 -4.04 -0.03 2.78 16 13 N -0.73 -18.50 5.60 -59.91 -0.34 -18.84 16 14 C -0.25 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 18 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.06 -0.60 9.24 -39.18 -0.36 -0.96 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 27 H 0.14 1.15 6.40 -52.49 -0.34 0.82 16 28 H 0.40 4.42 6.51 -40.82 -0.27 4.15 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -32.61 321.17 -8.40 -41.01 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.24 Total: 7.17 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.61 Total: -2.03 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.05 Total: -56.63 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.61 -8.40 -41.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131362970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.060 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds