Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99874 * 2 1 4 4 H 1.48497 * 109.47338 * 270.00249 * 3 2 1 5 5 H 1.48507 * 109.47143 * 30.00451 * 3 2 1 6 6 H 1.48500 * 109.47047 * 150.00085 * 3 2 1 7 7 C 1.38812 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99655 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47267 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47402 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00286 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00315 * 180.02562 * 13 12 11 16 16 C 1.50702 * 109.47238 * 179.97438 * 15 13 12 17 17 C 1.38270 * 119.99101 * 270.27404 * 16 15 13 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99806 * 16 15 13 23 23 H 0.97007 * 120.00200 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00260 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.47474 * 60.00023 * 10 9 7 26 26 H 1.08998 * 109.47062 * 299.99912 * 10 9 7 27 27 H 1.09010 * 109.46808 * 60.00033 * 11 10 9 28 28 H 1.08998 * 109.47413 * 300.00194 * 11 10 9 29 29 H 0.97003 * 120.00330 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.47579 * 59.99296 * 15 13 12 31 31 H 1.09000 * 109.46950 * 299.99217 * 15 13 12 32 32 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 34 34 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 35 35 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 7 1.7964 -6.0883 -0.0036 13 6 1.1226 -7.2556 -0.0046 14 8 -0.0902 -7.2556 -0.0045 15 6 1.8761 -8.5607 -0.0045 16 6 0.8968 -9.7061 -0.0050 17 6 0.4430 -10.2280 1.1923 18 6 -0.4507 -11.2823 1.1927 19 6 -0.9002 -11.8082 -0.0042 20 6 -0.4509 -11.2828 -1.2023 21 17 -1.0145 -11.9431 -2.7057 22 6 0.4483 -10.2311 -1.2021 23 1 -0.4851 0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0016 25 1 2.6848 -3.7153 0.8872 26 1 2.6847 -3.7136 -0.8928 27 1 0.4369 -4.7613 -0.8929 28 1 0.4376 -4.7626 0.8871 29 1 2.7665 -6.0884 -0.0041 30 1 2.5022 -8.6188 0.8858 31 1 2.5033 -8.6181 -0.8942 32 1 0.7901 -9.8142 2.1275 33 1 -0.8015 -11.6924 2.1282 34 1 -1.6017 -12.6293 -0.0037 35 1 0.7998 -9.8208 -2.1373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133211481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -15.033964 kcal Electronic energy + Delta-G solvation = -18354.216164 eV Core-core repulsion = 15184.940008 eV Total energy + Delta-G solvation = -3169.276156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17562 -38.94716 -36.70471 -35.70582 -33.85079 -33.10776 -31.24519 -30.98200 -28.70351 -26.96542 -23.68715 -22.95637 -22.13490 -21.45168 -20.26368 -17.51645 -17.14281 -16.94605 -16.13101 -15.89487 -15.31577 -15.20027 -14.57873 -14.12433 -13.92946 -13.85850 -13.51174 -13.34408 -13.13569 -12.86818 -12.39469 -11.80443 -11.65952 -11.63060 -11.39576 -11.12963 -11.08554 -10.83973 -10.82013 -10.14300 -9.94834 -9.74681 -9.14162 -9.00886 -8.90459 -8.85046 -7.01504 -5.81277 -3.12245 0.90553 1.00497 1.88947 2.68096 3.12384 3.41129 3.45324 3.47927 3.54151 4.29135 4.51299 4.56418 4.74961 4.86179 4.90790 4.99717 5.12914 5.23546 5.46964 5.48498 5.51718 5.62858 5.75717 5.94041 5.94397 6.04596 6.12986 6.20999 6.45745 6.52720 6.67969 6.71920 7.57815 7.64023 8.28935 8.36380 9.47513 10.02245 10.36813 11.41290 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.002437 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.917209 B =11488.284212 C =11750.959053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.724 5.724 13 C 0.509 3.491 14 O -0.532 6.532 15 C -0.104 4.104 16 C -0.050 4.050 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.033 4.033 21 Cl -0.074 7.074 22 C -0.096 4.096 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.400 0.600 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -26.336 0.268 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.376 5.376 13 C 0.295 3.705 14 O -0.408 6.408 15 C -0.144 4.144 16 C -0.051 4.051 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.059 4.059 21 Cl -0.045 7.045 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.234 0.766 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.864 -26.242 0.138 26.398 hybrid contribution 0.524 0.969 -0.173 1.115 sum 3.387 -25.274 -0.035 25.500 Atomic orbital electron populations 1.69667 1.05171 1.25883 1.57137 1.24787 0.95567 0.97850 1.02635 0.86147 0.78602 0.83578 0.77564 1.21605 1.21669 1.20696 1.19188 0.91029 0.83854 1.43507 0.91022 1.42197 1.06022 0.99589 1.89705 1.20754 0.93480 0.85698 0.98386 1.21580 0.95452 0.81697 1.02564 1.45935 1.10429 1.05972 1.75222 1.20400 0.88310 0.85035 0.76796 1.90754 1.13828 1.87522 1.48745 1.20705 0.97513 0.90464 1.05710 1.19232 0.97546 0.95533 0.92807 1.21118 0.97008 0.95941 0.97739 1.21068 0.97236 0.96526 0.97640 1.21040 1.00498 1.00788 0.90848 1.20850 0.99877 0.98036 0.87178 1.98371 1.88484 1.85176 1.32505 1.20882 0.96780 0.95132 0.98645 0.93329 0.77998 0.95818 0.95814 0.91309 0.91310 0.76632 0.87510 0.87630 0.85412 0.85013 0.85071 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.49 5.60 -59.91 -0.34 -18.83 16 10 C 0.15 2.79 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.86 5.79 -4.05 -0.02 1.84 16 12 N -0.72 -9.18 5.56 -60.30 -0.33 -9.52 16 13 C 0.51 6.69 7.82 -10.99 -0.09 6.60 16 14 O -0.53 -9.50 16.03 5.55 0.09 -9.41 16 15 C -0.10 -0.88 5.83 -29.03 -0.17 -1.05 16 16 C -0.05 -0.51 4.37 -104.63 -0.46 -0.97 16 17 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 18 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 19 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 20 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 21 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 22 C -0.10 -1.01 9.49 -39.55 -0.38 -1.39 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.39 10.39 7.67 -40.82 -0.31 10.08 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.40 3.76 8.47 -40.82 -0.35 3.42 16 30 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.11 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -33.93 324.40 -8.72 -42.65 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.43 Total: 7.08 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.80 Total: -4.27 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.05 Total: -55.90 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.93 -8.72 -42.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133211481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.619 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds