Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37914 * 119.93422 * 2 1 4 4 C 1.39597 * 119.86680 * 179.97438 * 3 2 1 5 5 C 1.47777 * 120.13114 * 179.97438 * 4 3 2 6 6 O 1.21567 * 120.00006 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00278 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00704 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47509 * 179.97438 * 8 7 5 10 10 N 1.46497 * 109.46977 * 180.02562 * 9 8 7 11 11 C 1.36939 * 120.00301 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99308 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00346 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99870 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46931 * 60.00019 * 15 13 11 17 17 H 1.48498 * 109.46900 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46913 * 299.99859 * 15 13 11 19 19 C 1.39636 * 119.73599 * 0.02562 * 4 3 2 20 20 C 1.37871 * 119.86973 * 359.97418 * 19 4 3 21 21 C 1.38495 * 119.93327 * 179.97438 * 2 1 3 22 22 Cl 1.73602 * 119.86887 * 359.72774 * 21 2 1 23 23 H 1.08998 * 109.47263 * 270.01639 * 1 2 3 24 24 H 1.08997 * 109.47147 * 30.02515 * 1 2 3 25 25 H 1.09006 * 109.47142 * 150.01669 * 1 2 3 26 26 H 1.08000 * 120.06568 * 359.97438 * 3 2 1 27 27 H 0.97004 * 119.99715 * 0.02562 * 7 5 4 28 28 H 1.09002 * 109.46863 * 300.00702 * 8 7 5 29 29 H 1.08999 * 109.46935 * 59.99720 * 8 7 5 30 30 H 1.08997 * 109.46954 * 300.00197 * 9 8 7 31 31 H 1.08993 * 109.46972 * 60.00286 * 9 8 7 32 32 H 0.97004 * 120.00113 * 0.02562 * 10 9 8 33 33 H 0.96997 * 119.99755 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.06314 * 179.97438 * 19 4 3 35 35 H 1.08002 * 119.93595 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5912 1.1935 0.0005 5 6 4.3345 2.4707 0.0000 6 8 3.7303 3.5256 -0.0014 7 7 5.6822 2.4661 0.0000 8 6 6.4192 3.7323 -0.0012 9 6 7.9224 3.4475 -0.0003 10 7 8.6593 4.7136 -0.0008 11 6 10.0287 4.7090 -0.0007 12 1 10.5654 3.7718 0.0002 13 6 10.7268 5.9087 -0.0006 14 7 10.0727 7.0508 -0.0012 15 14 12.5949 5.9022 0.0003 16 1 13.0880 5.2002 -1.2118 17 1 13.0947 7.3005 -0.0004 18 1 13.0869 5.2007 1.2132 19 6 4.2824 -0.0198 0.0005 20 6 3.5834 -1.2082 0.0005 21 6 2.1981 -1.2002 0.0005 22 17 1.3249 -2.7006 0.0084 23 1 -0.3634 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5136 26 1 1.6552 2.1305 -0.0004 27 1 6.1643 1.6244 0.0000 28 1 6.1578 4.3040 -0.8916 29 1 6.1579 4.3056 0.8883 30 1 8.1834 2.8760 0.8904 31 1 8.1841 2.8741 -0.8895 32 1 8.1772 5.5554 -0.0012 33 1 10.5606 7.8891 -0.0015 34 1 5.3624 -0.0272 0.0005 35 1 4.1169 -2.1472 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133244367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -13.901033 kcal Electronic energy + Delta-G solvation = -18444.433186 eV Core-core repulsion = 15275.206158 eV Total energy + Delta-G solvation = -3169.227028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45152 -38.81677 -36.80665 -35.75969 -34.07646 -33.21887 -31.55326 -30.97633 -28.02818 -27.13661 -24.46924 -23.11539 -22.41898 -21.52651 -20.22123 -17.99816 -17.22344 -16.84358 -16.28577 -15.45811 -15.33151 -14.83606 -14.55619 -14.52828 -13.97825 -13.77386 -13.58379 -13.20867 -12.90799 -12.81743 -12.79495 -12.35701 -11.84297 -11.81791 -11.44824 -11.16859 -11.09913 -10.85886 -10.81459 -10.19154 -10.02697 -9.76023 -9.31786 -9.14729 -8.98462 -8.84836 -7.02204 -5.81491 -3.12594 0.35374 0.85922 1.68638 2.59132 3.10651 3.41542 3.45845 3.47271 3.49969 4.25658 4.34100 4.48628 4.58320 4.77812 4.83465 5.05146 5.19422 5.24957 5.44384 5.47558 5.49272 5.69138 5.71311 5.73431 5.84581 5.91479 5.94407 6.10483 6.29360 6.40959 6.65883 6.68018 7.49656 7.63240 8.17774 8.36035 9.47245 10.01486 10.36194 11.40987 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.043739 B = 0.002530 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.005940 B =11065.746471 C =11680.001348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.051 4.051 4 C -0.119 4.119 5 C 0.553 3.447 6 O -0.534 6.534 7 N -0.716 5.716 8 C 0.110 3.890 9 C 0.144 3.856 10 N -0.729 5.729 11 C -0.246 4.246 12 H 0.071 0.929 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.285 1.285 19 C -0.081 4.081 20 C -0.113 4.113 21 C -0.019 4.019 22 Cl -0.064 7.064 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.399 0.601 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.138 0.862 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 -19.738 0.023 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.070 4.070 4 C -0.122 4.122 5 C 0.340 3.660 6 O -0.412 6.412 7 N -0.367 5.367 8 C -0.013 4.013 9 C 0.016 3.984 10 N -0.374 5.374 11 C -0.377 4.377 12 H 0.089 0.911 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.741 3.259 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.046 4.046 22 Cl -0.035 7.035 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.164 0.836 27 H 0.234 0.766 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.022 -19.121 0.023 26.971 hybrid contribution 1.191 -0.270 0.009 1.221 sum -17.832 -19.391 0.031 26.343 Atomic orbital electron populations 1.20894 0.89723 1.03780 1.03232 1.19754 0.97159 0.90982 1.00594 1.21153 0.92658 0.97973 0.95175 1.20135 0.94409 0.93360 1.04336 1.18133 0.82289 0.88542 0.77073 1.90799 1.68426 1.32351 1.49640 1.45857 1.05858 1.10600 1.74386 1.21641 0.92312 0.84521 1.02857 1.20755 0.87956 0.91204 0.98468 1.42176 1.03579 1.01953 1.89734 1.19141 0.82214 0.92629 1.43685 0.91070 1.24785 0.98161 0.95250 1.02580 1.69656 1.34521 0.96657 1.57024 0.86219 0.85188 0.76578 0.77873 1.21170 1.21591 1.21164 1.21309 1.00337 0.90949 0.97405 1.20982 0.91801 0.99274 1.01071 1.21059 0.92489 0.86918 1.04100 1.98370 1.76546 1.31969 1.96652 0.90384 0.90657 0.90679 0.83590 0.76589 0.90981 0.90985 0.95756 0.95750 0.77965 0.93270 0.84401 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.60 36.01 0.35 -0.47 16 2 C -0.08 -0.75 5.88 -104.65 -0.62 -1.37 16 3 C -0.05 -0.53 9.24 -39.19 -0.36 -0.89 16 4 C -0.12 -1.34 5.87 -104.97 -0.62 -1.96 16 5 C 0.55 7.95 7.77 -12.36 -0.10 7.86 16 6 O -0.53 -9.68 16.35 5.31 0.09 -9.60 16 7 N -0.72 -9.62 5.51 -61.27 -0.34 -9.96 16 8 C 0.11 1.86 5.79 -4.04 -0.02 1.83 16 9 C 0.14 2.77 6.37 -4.05 -0.03 2.74 16 10 N -0.73 -18.36 5.60 -59.92 -0.34 -18.70 16 11 C -0.25 -6.81 9.99 -15.06 -0.15 -6.96 16 12 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 15 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 C -0.08 -0.71 9.54 -39.19 -0.37 -1.08 16 20 C -0.11 -0.91 9.81 -39.61 -0.39 -1.29 16 21 C -0.02 -0.16 6.32 -39.38 -0.25 -0.41 16 22 Cl -0.06 -0.50 27.27 -51.86 -1.41 -1.92 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.07 0.47 6.90 -51.93 -0.36 0.12 16 26 H 0.15 1.53 7.65 -52.49 -0.40 1.13 16 27 H 0.40 4.13 6.50 -40.82 -0.27 3.86 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.39 10.31 7.67 -40.82 -0.31 9.99 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.14 0.90 6.40 -52.48 -0.34 0.56 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -32.61 318.46 -8.33 -40.94 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.18 Total: 7.14 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.65 Total: -2.42 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.05 Total: -56.08 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.41 Total: -1.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.61 -8.33 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133244367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.035 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds