Wall clock time and date at job start Tue Mar 31 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37981 * 120.06657 * 2 1 4 4 C 1.38308 * 120.16391 * 180.30020 * 3 2 1 5 5 C 1.38494 * 120.27619 * 359.72040 * 4 3 2 6 6 Cl 1.73605 * 119.93893 * 179.97438 * 5 4 3 7 7 C 1.38059 * 120.11975 * 0.02744 * 5 4 3 8 8 C 1.39562 * 120.05704 * 179.77334 * 2 1 3 9 9 C 1.47852 * 120.13647 * 359.97341 * 8 2 1 10 10 O 1.21553 * 120.00349 * 353.48253 * 9 8 2 11 11 N 1.34778 * 120.00122 * 173.48513 * 9 8 2 12 12 C 1.46498 * 120.00154 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46956 * 179.97438 * 12 11 9 14 14 N 1.46498 * 109.46956 * 179.97438 * 13 12 11 15 15 C 1.36935 * 120.00082 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99995 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00254 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00154 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00292 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46832 * 60.00221 * 19 17 15 21 21 H 1.48497 * 109.47431 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47356 * 300.00541 * 19 17 15 23 23 H 1.09000 * 109.46920 * 263.63813 * 1 2 3 24 24 H 1.09002 * 109.46959 * 23.63415 * 1 2 3 25 25 H 1.08999 * 109.47607 * 143.63380 * 1 2 3 26 26 H 1.08007 * 119.91896 * 0.02562 * 3 2 1 27 27 H 1.08005 * 119.86407 * 179.70598 * 4 3 2 28 28 H 1.08002 * 120.07644 * 179.97438 * 7 5 4 29 29 H 0.97000 * 119.99796 * 359.97438 * 11 9 8 30 30 H 1.09000 * 109.46977 * 60.00055 * 12 11 9 31 31 H 1.09004 * 109.46925 * 299.99787 * 12 11 9 32 32 H 1.08998 * 109.47340 * 300.00130 * 13 12 11 33 33 H 1.09000 * 109.47179 * 60.00245 * 13 12 11 34 34 H 0.97000 * 120.00050 * 0.02562 * 14 13 12 35 35 H 0.97006 * 120.00411 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1941 0.0000 4 6 3.5814 1.1965 -0.0063 5 6 4.2817 0.0017 -0.0067 6 17 6.0177 0.0148 -0.0153 7 6 3.6017 -1.1999 -0.0015 8 6 2.2061 -1.2079 0.0048 9 6 1.4711 -2.4909 0.0104 10 8 0.2616 -2.4979 0.1304 11 7 2.1423 -3.6526 -0.1174 12 6 1.4142 -4.9238 -0.1112 13 6 2.4042 -6.0793 -0.2712 14 7 1.6761 -7.3506 -0.2644 15 6 2.3580 -8.5308 -0.3952 16 1 3.4327 -8.5246 -0.5030 17 6 1.6682 -9.7354 -0.3883 18 7 0.3587 -9.7431 -0.2564 19 14 2.5983 -11.3454 -0.5675 20 1 3.5703 -11.4822 0.5470 21 1 1.6389 -12.4782 -0.5299 22 1 3.3253 -11.3558 -1.8623 23 1 -0.3633 -0.1139 1.0213 24 1 -0.3633 0.9415 -0.4120 25 1 -0.3634 -0.8275 -0.6093 26 1 1.6581 2.1294 0.0004 27 1 4.1176 2.1340 -0.0110 28 1 4.1485 -2.1312 -0.0023 29 1 3.1076 -3.6470 -0.2135 30 1 0.7024 -4.9388 -0.9365 31 1 0.8790 -5.0313 0.8323 32 1 2.9391 -5.9716 -1.2148 33 1 3.1163 -6.0646 0.5539 34 1 0.7109 -7.3562 -0.1680 35 1 -0.1233 -10.5849 -0.2512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135501156.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:58 Heat of formation + Delta-G solvation = -9.335955 kcal Electronic energy + Delta-G solvation = -18727.592583 eV Core-core repulsion = 15558.563512 eV Total energy + Delta-G solvation = -3169.029071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58183 -38.64205 -36.81564 -35.79842 -34.08299 -32.61140 -31.99530 -30.94736 -27.99143 -26.91969 -24.40734 -23.42482 -22.02636 -21.33763 -20.56958 -18.12650 -17.23350 -16.49633 -15.97567 -15.60051 -15.32945 -15.15724 -14.53587 -14.35360 -13.92871 -13.69629 -13.48959 -13.20013 -13.01976 -12.91606 -12.46578 -12.16049 -11.74167 -11.51920 -11.44032 -11.31496 -11.12129 -10.84033 -10.80650 -10.15985 -9.84385 -9.65101 -9.47841 -9.06301 -8.92852 -8.78785 -7.01407 -5.80839 -3.11830 0.45222 0.78222 1.75384 2.64150 3.12471 3.42272 3.46248 3.46682 3.47925 4.30701 4.35748 4.55455 4.58459 4.75675 4.92068 5.12144 5.28643 5.42168 5.48338 5.53987 5.64616 5.67105 5.74128 5.77183 5.91484 5.98046 6.09081 6.21255 6.36747 6.48045 6.66929 6.69386 7.50293 7.64226 8.18629 8.36689 9.47991 10.02184 10.37025 11.41644 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003129 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.851469 B = 8946.944499 C =10148.478832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.018 4.018 3 C -0.120 4.120 4 C -0.084 4.084 5 C -0.051 4.051 6 Cl -0.066 7.066 7 C -0.073 4.073 8 C -0.123 4.123 9 C 0.555 3.445 10 O -0.527 6.527 11 N -0.717 5.717 12 C 0.111 3.889 13 C 0.144 3.856 14 N -0.729 5.729 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.399 0.601 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 25.062 0.435 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.019 4.019 3 C -0.138 4.138 4 C -0.103 4.103 5 C -0.078 4.078 6 Cl -0.037 7.037 7 C -0.093 4.093 8 C -0.126 4.126 9 C 0.342 3.658 10 O -0.406 6.406 11 N -0.368 5.368 12 C -0.012 4.012 13 C 0.015 3.985 14 N -0.374 5.374 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.239 24.874 0.498 25.649 hybrid contribution 0.994 -0.935 -0.087 1.367 sum 7.233 23.939 0.412 25.012 Atomic orbital electron populations 1.21133 0.89360 1.03366 1.04104 1.20206 0.97467 0.91259 0.92973 1.21042 0.93191 0.98041 1.01496 1.21235 0.94288 0.97036 0.97706 1.20755 0.85005 0.94872 1.07134 1.98388 1.09395 1.98930 1.97022 1.21228 0.93143 0.97507 0.97379 1.19828 0.92600 0.94006 1.06205 1.18067 0.87134 0.83402 0.77238 1.90748 1.13454 1.86963 1.49402 1.45890 1.11122 1.06185 1.73589 1.21631 0.95552 0.81271 1.02776 1.20763 0.93549 0.85724 0.98415 1.42168 1.06835 0.99725 1.88688 1.19148 0.91549 0.84060 1.42923 0.91066 1.24774 0.95634 0.97820 1.02503 1.69655 1.05707 1.25897 1.56627 0.86223 0.78503 0.83211 0.77948 1.21161 1.21594 1.21166 0.90224 0.92206 0.88218 0.84351 0.84511 0.84362 0.76652 0.90988 0.90973 0.95745 0.95751 0.77975 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.72 36.01 0.31 -0.95 16 2 C -0.02 -0.19 5.91 -104.22 -0.62 -0.80 16 3 C -0.12 -0.95 9.66 -39.65 -0.38 -1.33 16 4 C -0.08 -0.65 9.82 -39.46 -0.39 -1.04 16 5 C -0.05 -0.46 6.31 -39.55 -0.25 -0.71 16 6 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.08 16 7 C -0.07 -0.72 9.30 -39.15 -0.36 -1.09 16 8 C -0.12 -1.42 5.87 -104.97 -0.62 -2.03 16 9 C 0.55 7.88 7.70 -12.33 -0.09 7.78 16 10 O -0.53 -8.95 13.35 5.32 0.07 -8.88 16 11 N -0.72 -9.77 5.51 -61.25 -0.34 -10.11 16 12 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 13 C 0.14 2.78 6.37 -4.04 -0.03 2.76 16 14 N -0.73 -18.43 5.60 -59.91 -0.34 -18.76 16 15 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.46 8.04 -51.93 -0.42 0.04 16 25 H 0.10 1.26 5.87 -51.93 -0.30 0.95 16 26 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 27 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 28 H 0.14 1.17 6.46 -52.49 -0.34 0.83 16 29 H 0.40 4.40 6.55 -40.82 -0.27 4.13 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -31.87 315.85 -8.48 -40.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.15 Total: 7.93 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.69 Total: -2.98 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.05 Total: -56.33 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.87 -8.48 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135501156.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds