Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47283 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00148 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 17 17 C 1.38234 * 120.00769 * 99.99994 * 16 15 13 18 18 C 1.38216 * 120.01261 * 179.97438 * 17 16 15 19 19 C 1.38263 * 120.02947 * 0.04121 * 18 17 16 20 20 C 1.38193 * 120.01011 * 359.97438 * 19 18 17 21 21 C 1.38333 * 120.00619 * 279.72404 * 16 15 13 22 22 Cl 1.73602 * 120.01085 * 359.97438 * 21 16 15 23 23 H 0.97001 * 119.99359 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 26 26 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00052 * 11 10 9 28 28 H 1.09002 * 109.47153 * 300.00243 * 11 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.08005 * 119.99257 * 359.97438 * 17 16 15 33 33 H 1.08009 * 119.98600 * 180.02562 * 18 17 16 34 34 H 1.07995 * 119.99388 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.00707 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1222 -7.2556 0.0019 14 8 -0.0906 -7.2556 0.0020 15 6 1.8757 -8.5607 0.0031 16 6 0.8963 -9.7062 0.0036 17 6 0.6054 -10.3676 -1.1748 18 6 -0.2924 -11.4184 -1.1744 19 6 -0.9007 -11.8083 0.0044 20 6 -0.6109 -11.1476 1.1831 21 6 0.2926 -10.0996 1.1844 22 17 0.6633 -9.2745 2.6662 23 1 -0.4849 0.8401 0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6846 -3.7145 0.8905 26 1 2.6846 -3.7146 -0.8894 27 1 0.4367 -4.7621 -0.8886 28 1 0.4373 -4.7618 0.8914 29 1 2.7661 -6.0885 0.0014 30 1 2.5029 -8.6190 -0.8864 31 1 2.5017 -8.6181 0.8936 32 1 1.0798 -10.0631 -2.0961 33 1 -0.5190 -11.9352 -2.0954 34 1 -1.6024 -12.6292 0.0040 35 1 -1.0859 -11.4524 2.1040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150109208.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = -12.854769 kcal Electronic energy + Delta-G solvation = -18664.018279 eV Core-core repulsion = 15494.836620 eV Total energy + Delta-G solvation = -3169.181659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14842 -38.88005 -36.56535 -35.67312 -33.80473 -33.15320 -31.21405 -30.94996 -28.63822 -26.90436 -23.65300 -22.95718 -22.11137 -21.41198 -20.21181 -17.49626 -17.16460 -16.90915 -16.17468 -15.85865 -15.18237 -15.11533 -14.54768 -14.08279 -13.96482 -13.83588 -13.49197 -13.20186 -13.06237 -12.81517 -12.33312 -11.85761 -11.67087 -11.56501 -11.33965 -11.10073 -10.92721 -10.81624 -10.79312 -10.12251 -9.90147 -9.71585 -9.12370 -8.97304 -8.85753 -8.80007 -6.99113 -5.79302 -3.10037 0.92451 1.01778 2.00350 2.76147 3.17831 3.42424 3.46670 3.49244 3.56298 4.32074 4.48790 4.58258 4.70315 4.89217 4.94978 5.08127 5.15492 5.27897 5.46533 5.50706 5.55287 5.65754 5.79674 5.96365 5.97717 6.09287 6.16221 6.16883 6.50676 6.54498 6.71659 6.76622 7.63938 7.66043 8.35525 8.38801 9.49529 10.04565 10.39253 11.43323 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037343 B = 0.002814 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.626942 B = 9947.800533 C =10164.410079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.724 5.724 13 C 0.514 3.486 14 O -0.530 6.530 15 C -0.109 4.109 16 C -0.055 4.055 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.017 4.017 22 Cl -0.065 7.065 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.399 0.601 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -26.497 -0.054 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.376 5.376 13 C 0.299 3.701 14 O -0.406 6.406 15 C -0.149 4.149 16 C -0.056 4.056 17 C -0.116 4.116 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.044 4.044 22 Cl -0.036 7.036 23 H 0.066 0.934 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.797 -26.267 0.094 26.416 hybrid contribution 0.619 1.083 0.134 1.255 sum 3.416 -25.184 0.227 25.415 Atomic orbital electron populations 1.69672 1.05159 1.25840 1.57202 1.24785 0.95568 0.97828 1.02688 0.86146 0.78606 0.83601 0.77543 1.21624 1.21682 1.20707 1.19192 0.91028 0.83869 1.43411 0.91037 1.42198 1.06023 0.99591 1.89688 1.20755 0.93498 0.85702 0.98368 1.21560 0.95416 0.81672 1.02514 1.45900 1.10362 1.05930 1.75392 1.20263 0.88281 0.84892 0.76687 1.90739 1.13707 1.87459 1.48654 1.20738 0.97689 0.90711 1.05739 1.19170 0.97993 0.96278 0.92148 1.20999 0.98133 0.95618 0.96833 1.21198 0.96665 0.97164 0.98395 1.21100 0.99775 0.99912 0.92058 1.21028 0.97304 0.95226 0.99439 1.20786 0.99819 0.96218 0.87580 1.98380 1.93450 1.78271 1.33543 0.93357 0.78002 0.95819 0.95825 0.91355 0.91345 0.76714 0.87563 0.87510 0.85128 0.85384 0.85207 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 10 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16 11 C 0.11 1.96 5.79 -4.04 -0.02 1.93 16 12 N -0.72 -9.85 5.56 -60.30 -0.33 -10.18 16 13 C 0.51 7.26 7.62 -10.98 -0.08 7.18 16 14 O -0.53 -9.77 15.96 5.56 0.09 -9.68 16 15 C -0.11 -1.08 5.30 -29.03 -0.15 -1.24 16 16 C -0.05 -0.60 4.42 -104.59 -0.46 -1.07 16 17 C -0.10 -0.92 9.67 -39.59 -0.38 -1.31 16 18 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 19 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 20 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 21 C -0.02 -0.20 6.21 -39.50 -0.25 -0.45 16 22 Cl -0.07 -0.79 27.34 -51.86 -1.42 -2.20 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 30 H 0.11 0.74 8.01 -51.93 -0.42 0.33 16 31 H 0.11 0.92 7.34 -51.93 -0.38 0.54 16 32 H 0.13 0.97 8.04 -52.48 -0.42 0.54 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -34.29 321.58 -8.64 -42.93 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.38 Total: 7.52 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.81 Total: -3.76 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.05 Total: -57.04 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.42 Total: -2.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.29 -8.64 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150109208.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds