Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.84904 * 180.27952 * 7 2 1 9 9 C 1.53656 * 108.31295 * 231.38172 * 8 7 2 10 10 C 1.52961 * 109.32481 * 305.14505 * 9 8 7 11 11 H 1.09002 * 109.41136 * 303.61609 * 10 9 8 12 12 N 1.46501 * 109.41451 * 183.83504 * 10 9 8 13 13 C 1.39248 * 120.00486 * 84.64352 * 12 10 9 14 14 C 1.39004 * 119.69188 * 359.97438 * 13 12 10 15 15 C 1.38418 * 119.14023 * 179.97438 * 14 13 12 16 16 C 1.38770 * 118.52602 * 0.02562 * 15 14 13 17 17 C 1.38246 * 119.31810 * 359.97438 * 16 15 14 18 18 Cl 1.73593 * 119.60039 * 179.97438 * 17 16 15 19 19 N 1.32097 * 120.80314 * 359.72818 * 17 16 15 20 20 O 1.41609 * 119.20015 * 180.27497 * 19 17 16 21 21 C 1.52959 * 109.81868 * 63.72147 * 10 9 8 22 22 C 1.51268 * 120.84525 * 359.97438 * 7 2 1 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.63116 * 351.04377 * 8 7 2 25 25 H 1.09005 * 109.62656 * 111.61069 * 8 7 2 26 26 H 1.08995 * 109.42221 * 185.24839 * 9 8 7 27 27 H 1.09004 * 109.62528 * 65.15735 * 9 8 7 28 28 H 0.97000 * 119.99262 * 264.64026 * 12 10 9 29 29 H 1.07998 * 120.43203 * 359.97438 * 14 13 12 30 30 H 1.07998 * 120.73871 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.34652 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47731 * 176.42234 * 21 10 9 33 33 H 1.08999 * 109.49014 * 56.39300 * 21 10 9 34 34 H 1.08999 * 109.62694 * 248.38847 * 22 7 2 35 35 H 1.08994 * 109.62653 * 8.77283 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 6 3.5171 -1.2164 0.0069 9 6 3.9912 -2.1316 -1.1327 10 6 3.3403 -3.5075 -0.9810 11 1 3.5740 -3.9122 0.0038 12 7 3.8607 -4.4088 -2.0121 13 6 5.0566 -5.0906 -1.8021 14 6 5.7517 -4.9109 -0.6118 15 6 6.9389 -5.5947 -0.4147 16 6 7.3926 -6.4379 -1.4192 17 6 6.6511 -6.5700 -2.5785 18 17 7.2121 -7.6223 -3.8400 19 7 5.5183 -5.9089 -2.7359 20 8 4.7830 -6.0740 -3.9348 21 6 1.8234 -3.3832 -1.1327 22 6 1.2678 -2.5151 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 3.8989 -0.2075 -0.1493 25 1 3.8735 -1.6018 0.9622 26 1 5.0752 -2.2353 -1.0872 27 1 3.7071 -1.6990 -2.0920 28 1 3.3721 -4.5305 -2.8412 29 1 5.3704 -4.2464 0.1494 30 1 7.5001 -5.4741 0.5000 31 1 8.3150 -6.9860 -1.2963 32 1 1.3712 -4.3740 -1.0871 33 1 1.5905 -2.9211 -2.0920 34 1 1.4200 -3.0184 0.9565 35 1 0.2033 -2.3407 -0.1546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049692.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = 46.473084 kcal Electronic energy + Delta-G solvation = -19893.283493 eV Core-core repulsion = 16726.674483 eV Total energy + Delta-G solvation = -3166.609010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31571 -37.97261 -36.90034 -34.81570 -34.36626 -32.01645 -30.20260 -29.66445 -29.41608 -27.20534 -24.28468 -23.51007 -21.82994 -21.58902 -19.69806 -18.34660 -17.78323 -16.48906 -16.24217 -15.81248 -15.30911 -14.89786 -14.81051 -14.55052 -13.55061 -13.14393 -12.73850 -12.54868 -12.45451 -12.20524 -12.07555 -11.86491 -11.35051 -11.26291 -11.23184 -11.03722 -10.84577 -10.44825 -10.24879 -10.09199 -9.65850 -9.15489 -9.04491 -8.89628 -8.59926 -8.58884 -7.66398 -6.23152 -4.15900 0.49376 0.83396 1.34534 2.49156 3.13513 3.18577 3.27523 3.28554 3.44932 4.27011 4.32556 4.41648 4.75319 4.95303 5.05664 5.30413 5.47096 5.57022 5.75462 5.80731 5.89880 6.19763 6.24888 6.40281 6.50771 6.61608 6.61953 6.83285 6.89830 6.96669 7.21098 7.39081 7.49910 7.54036 7.66605 7.74377 8.21715 8.82097 9.40657 10.86111 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034855 B = 0.003993 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.130706 B = 7010.917557 C = 7283.729037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.496 4.496 8 C -0.012 4.012 9 C -0.123 4.123 10 C 0.155 3.845 11 H 0.078 0.922 12 N -0.690 5.690 13 C 0.415 3.585 14 C -0.201 4.201 15 C -0.021 4.021 16 C -0.191 4.191 17 C 0.189 3.811 18 Cl 0.005 6.995 19 N -0.187 5.187 20 O -0.564 6.564 21 C -0.115 4.115 22 C 0.015 3.985 23 H 0.266 0.734 24 H 0.035 0.965 25 H 0.020 0.980 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.418 0.582 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.007 0.993 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 -10.098 1.811 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.515 4.515 8 C -0.050 4.050 9 C -0.162 4.162 10 C 0.052 3.948 11 H 0.096 0.904 12 N -0.320 5.320 13 C 0.184 3.816 14 C -0.226 4.226 15 C -0.046 4.046 16 C -0.215 4.215 17 C 0.037 3.963 18 Cl 0.034 6.966 19 N 0.115 4.885 20 O -0.611 6.611 21 C -0.154 4.154 22 C -0.023 4.023 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.257 0.743 29 H 0.185 0.815 30 H 0.176 0.824 31 H 0.180 0.820 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.201 -9.980 1.418 17.415 hybrid contribution 0.163 0.736 -0.836 1.126 sum 14.364 -9.244 0.582 17.091 Atomic orbital electron populations 1.69823 1.06215 1.27213 1.48986 1.24857 0.94724 0.98686 0.94233 0.86656 0.79910 0.83218 0.78550 1.20346 1.19141 1.21528 1.19995 0.89255 0.91487 1.50780 1.19798 0.96797 0.95183 0.93210 1.22180 0.96936 0.95062 1.02010 1.21414 0.95937 0.88529 0.88874 0.90362 1.45781 1.19299 1.44009 1.22861 1.18217 0.88662 0.87326 0.87427 1.21374 0.97564 1.06954 0.96703 1.21473 0.93716 0.91075 0.98343 1.21181 1.03019 1.05498 0.91806 1.21585 0.87950 0.94140 0.92655 1.98431 1.85998 1.61350 1.50863 1.42804 1.11939 1.19180 1.14544 1.97601 1.62968 1.92128 1.08432 1.21969 0.91175 0.99237 1.02984 1.19346 0.99013 0.92620 0.91323 0.92378 0.94683 0.96150 0.94414 0.92172 0.74285 0.81486 0.82419 0.82036 0.94111 0.92204 0.97446 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 12.73 55.43 0.71 -23.56 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 19.97 27.28 -169.99 -4.64 15.33 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.27 -5.72 6.45 56.52 0.36 -5.36 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -11.98 5.50 -98.93 -0.54 -12.53 16 8 C -0.01 -0.24 5.62 -27.27 -0.15 -0.40 16 9 C -0.12 -2.22 5.42 -26.41 -0.14 -2.36 16 10 C 0.15 2.62 2.04 -67.97 -0.14 2.48 16 11 H 0.08 1.22 6.46 -51.93 -0.34 0.89 16 12 N -0.69 -11.47 5.19 -53.92 -0.28 -11.75 16 13 C 0.41 6.40 7.47 -154.76 -1.16 5.25 16 14 C -0.20 -2.29 8.79 -39.23 -0.34 -2.63 16 15 C -0.02 -0.17 10.16 -39.32 -0.40 -0.57 16 16 C -0.19 -1.73 9.87 -39.38 -0.39 -2.12 16 17 C 0.19 2.58 7.17 -17.43 -0.13 2.45 16 18 Cl 0.00 0.06 28.25 -51.86 -1.46 -1.40 16 19 N -0.19 -3.22 3.60 -9.49 -0.03 -3.26 16 20 O -0.56 -12.74 18.29 -11.47 -0.21 -12.95 16 21 C -0.12 -2.22 5.40 -26.61 -0.14 -2.36 16 22 C 0.01 0.34 5.97 -27.46 -0.16 0.17 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.03 0.73 4.77 -51.93 -0.25 0.49 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.42 7.55 7.70 -40.82 -0.31 7.24 16 29 H 0.17 1.73 6.10 -52.49 -0.32 1.41 16 30 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -31.47 299.78 -9.32 -40.78 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.11 Total: 2.97 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.80 Total: -10.69 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.39 Total: -38.56 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.21 Total: -12.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.64 Total: 15.33 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.46 Total: -1.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.47 -9.32 -40.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049692.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.257 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds