Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00375 * 2 1 4 4 H 1.48502 * 109.47121 * 239.99864 * 3 2 1 5 5 H 1.48501 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47587 * 119.99545 * 3 2 1 7 7 C 1.37881 * 119.99814 * 179.97438 * 2 1 3 8 8 C 1.51262 * 120.84915 * 180.28675 * 7 2 1 9 9 C 1.53236 * 108.53353 * 231.06965 * 8 7 2 10 10 C 1.52954 * 109.40515 * 305.37271 * 9 8 7 11 11 H 1.09007 * 109.41410 * 303.49063 * 10 9 8 12 12 N 1.46502 * 109.35874 * 183.66763 * 10 9 8 13 13 C 1.39329 * 119.99806 * 84.67731 * 12 10 9 14 14 C 1.39003 * 119.68961 * 0.02562 * 13 12 10 15 15 C 1.38393 * 119.12762 * 179.97438 * 14 13 12 16 16 C 1.38903 * 118.50434 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 120.35117 * 180.02562 * 16 15 14 18 18 C 1.38196 * 119.29843 * 0.02562 * 16 15 14 19 19 N 1.32020 * 120.82476 * 359.73833 * 18 16 15 20 20 O 1.41599 * 119.19056 * 180.25638 * 19 18 16 21 21 C 1.52962 * 109.81860 * 63.59882 * 10 9 8 22 22 C 1.51276 * 120.84825 * 359.97438 * 7 2 1 23 23 H 0.96997 * 119.99564 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.62853 * 350.77940 * 8 7 2 25 25 H 1.08994 * 109.62831 * 111.35952 * 8 7 2 26 26 H 1.09002 * 109.48366 * 185.39419 * 9 8 7 27 27 H 1.09001 * 109.49243 * 65.36022 * 9 8 7 28 28 H 0.96993 * 120.00151 * 264.68403 * 12 10 9 29 29 H 1.08001 * 120.43296 * 359.95205 * 14 13 12 30 30 H 1.08000 * 120.74701 * 179.97438 * 15 14 13 31 31 H 1.08002 * 119.58946 * 180.02562 * 18 16 15 32 32 H 1.09003 * 109.48320 * 176.42559 * 21 10 9 33 33 H 1.08997 * 109.49150 * 56.38933 * 21 10 9 34 34 H 1.08997 * 109.62461 * 248.64378 * 22 7 2 35 35 H 1.08996 * 109.62473 * 9.02265 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0070 9 6 3.9954 -2.1344 -1.1230 10 6 3.3439 -3.5098 -0.9708 11 1 3.5738 -3.9124 0.0158 12 7 3.8683 -4.4120 -1.9991 13 6 5.0641 -5.0938 -1.7835 14 6 5.7539 -4.9137 -0.5902 15 6 6.9402 -5.5971 -0.3881 16 6 7.3977 -6.4419 -1.3913 17 17 8.8797 -7.3230 -1.1880 18 6 6.6608 -6.5736 -2.5529 19 7 5.5299 -5.9120 -2.7153 20 8 4.7998 -6.0769 -3.9172 21 6 1.8275 -3.3858 -1.1287 22 6 1.2676 -2.5152 0.0017 23 1 -0.4849 0.8401 -0.0004 24 1 3.8989 -0.2084 -0.1537 25 1 3.8734 -1.5979 0.9639 26 1 5.0793 -2.2380 -1.0730 27 1 3.7153 -1.7038 -2.0844 28 1 3.3831 -4.5346 -2.8299 29 1 5.3693 -4.2488 0.1690 30 1 7.4977 -5.4764 0.5290 31 1 7.0119 -7.2295 -3.3358 32 1 1.3750 -4.3764 -1.0826 33 1 1.5984 -2.9257 -2.0899 34 1 1.4162 -3.0164 0.9581 35 1 0.2038 -2.3411 -0.1590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = 41.254203 kcal Electronic energy + Delta-G solvation = -19792.866866 eV Core-core repulsion = 16626.031548 eV Total energy + Delta-G solvation = -3166.835318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38630 -37.98969 -37.02478 -34.68706 -34.38540 -32.07876 -30.27594 -29.79123 -29.39192 -27.16376 -24.51063 -23.47154 -21.83748 -21.62395 -19.73701 -18.37938 -17.78029 -16.69970 -16.27428 -15.68927 -15.19629 -15.02761 -14.74994 -14.55155 -13.56294 -13.26621 -13.01240 -12.85899 -12.53375 -12.40398 -12.11447 -11.87438 -11.35830 -11.32267 -11.19167 -10.84308 -10.81114 -10.43639 -10.35446 -10.11934 -9.78034 -9.17005 -9.14391 -8.95832 -8.72291 -8.61381 -7.67593 -6.24421 -4.17504 0.53383 0.67722 1.54288 2.49792 3.07586 3.19320 3.27180 3.27858 3.40360 4.26204 4.26413 4.30154 4.43494 5.00360 5.06655 5.25049 5.37908 5.46276 5.53152 5.69349 5.82673 6.17786 6.22260 6.37807 6.48517 6.59474 6.62994 6.80694 6.85842 6.95353 7.18249 7.37230 7.47649 7.52173 7.64539 7.71059 8.19981 8.80309 9.39218 10.84953 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.003973 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.023721 B = 7045.840803 C = 7517.457535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.498 4.498 8 C -0.007 4.007 9 C -0.123 4.123 10 C 0.153 3.847 11 H 0.079 0.921 12 N -0.687 5.687 13 C 0.406 3.594 14 C -0.191 4.191 15 C -0.018 4.018 16 C -0.128 4.128 17 Cl -0.040 7.040 18 C 0.140 3.860 19 N -0.177 5.177 20 O -0.573 6.573 21 C -0.115 4.115 22 C 0.015 3.985 23 H 0.267 0.733 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.418 0.582 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.007 0.993 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 -9.934 2.023 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.517 4.517 8 C -0.045 4.045 9 C -0.162 4.162 10 C 0.051 3.949 11 H 0.097 0.903 12 N -0.316 5.316 13 C 0.174 3.826 14 C -0.216 4.216 15 C -0.044 4.044 16 C -0.160 4.160 17 Cl -0.012 7.012 18 C -0.007 4.007 19 N 0.128 4.872 20 O -0.620 6.620 21 C -0.154 4.154 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.258 0.742 29 H 0.189 0.811 30 H 0.176 0.824 31 H 0.200 0.800 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.970 -9.781 1.764 17.145 hybrid contribution 0.347 0.749 -0.652 1.052 sum 14.317 -9.032 1.111 16.964 Atomic orbital electron populations 1.69810 1.06208 1.27366 1.48827 1.24848 0.94741 0.98667 0.94179 0.86649 0.79465 0.82926 0.79015 1.19938 1.21727 1.19896 1.19977 0.89172 0.91528 1.50975 1.19594 0.96837 0.94718 0.93369 1.22099 0.96965 0.95026 1.02077 1.21435 0.95970 0.88521 0.89006 0.90266 1.45820 1.19322 1.43736 1.22740 1.18437 0.88618 0.87597 0.87944 1.21227 0.96874 1.06667 0.96850 1.21428 0.93980 0.90858 0.98120 1.20615 0.93926 1.04499 0.96959 1.98381 1.31196 1.74459 1.97120 1.22032 0.85394 0.95602 0.97678 1.42803 1.12027 1.18666 1.13716 1.97589 1.63758 1.92416 1.08263 1.21972 0.91118 0.99280 1.03010 1.19345 0.99006 0.92571 0.91360 0.92287 0.95225 0.96073 0.94348 0.92120 0.74220 0.81093 0.82409 0.80026 0.94067 0.92168 0.97420 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 12.73 55.43 0.71 -23.48 16 2 C 0.08 2.04 5.46 -17.81 -0.10 1.94 16 3 Si 0.89 20.08 26.80 -169.99 -4.56 15.52 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.50 -11.96 5.51 -98.92 -0.55 -12.50 16 8 C -0.01 -0.14 5.59 -27.49 -0.15 -0.30 16 9 C -0.12 -2.19 5.40 -26.63 -0.14 -2.33 16 10 C 0.15 2.54 2.04 -67.97 -0.14 2.40 16 11 H 0.08 1.21 6.46 -51.92 -0.34 0.87 16 12 N -0.69 -11.13 5.19 -53.90 -0.28 -11.41 16 13 C 0.41 6.05 7.47 -154.70 -1.16 4.89 16 14 C -0.19 -2.15 8.80 -39.24 -0.35 -2.49 16 15 C -0.02 -0.16 9.97 -39.28 -0.39 -0.55 16 16 C -0.13 -1.25 6.34 -39.35 -0.25 -1.50 16 17 Cl -0.04 -0.33 28.99 -51.86 -1.50 -1.83 16 18 C 0.14 1.73 10.49 -17.49 -0.18 1.55 16 19 N -0.18 -2.91 3.59 -12.32 -0.04 -2.95 16 20 O -0.57 -12.70 19.04 -11.47 -0.22 -12.92 16 21 C -0.12 -2.19 5.40 -26.61 -0.14 -2.33 16 22 C 0.02 0.34 5.97 -27.46 -0.16 0.17 16 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.03 0.61 5.17 -51.93 -0.27 0.34 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.42 7.36 7.69 -40.82 -0.31 7.05 16 29 H 0.17 1.73 6.11 -52.49 -0.32 1.41 16 30 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -30.61 301.43 -9.16 -39.78 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.10 Total: 3.80 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.71 Total: -11.04 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.38 Total: -37.84 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.22 Total: -12.92 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.56 Total: 15.52 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.61 -9.16 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.031 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds