Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86796 * 120.00237 * 2 1 4 4 H 1.48504 * 109.46873 * 239.99980 * 3 2 1 5 5 H 1.48498 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47574 * 120.00180 * 3 2 1 7 7 C 1.39876 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00219 * 197.64131 * 7 2 1 9 9 C 1.41194 * 119.99710 * 17.64455 * 7 2 1 10 10 C 1.40791 * 120.56514 * 203.67446 * 9 7 2 11 11 N 1.31467 * 120.39087 * 179.71864 * 10 9 7 12 12 C 1.32746 * 121.73636 * 0.52780 * 11 10 9 13 13 N 1.38419 * 119.43336 * 179.74615 * 12 11 10 14 14 C 1.48561 * 110.99480 * 119.85370 * 13 12 11 15 15 C 1.54375 * 104.59154 * 200.95818 * 14 13 12 16 16 C 1.54266 * 105.06198 * 23.85589 * 15 14 13 17 17 H 1.08998 * 110.32236 * 241.00128 * 16 15 14 18 18 C 1.53000 * 110.32521 * 118.89557 * 16 15 14 19 19 O 1.42898 * 109.47281 * 66.45244 * 18 16 15 20 20 C 1.48556 * 110.99798 * 4.43700 * 13 12 11 21 21 C 1.39784 * 121.12700 * 359.47162 * 12 11 10 22 22 Cl 1.73607 * 120.26142 * 180.27842 * 21 12 11 23 23 C 1.36663 * 119.47753 * 0.25510 * 21 12 11 24 24 H 0.96998 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.80454 * 0.02562 * 10 9 7 26 26 H 1.09003 * 110.40926 * 82.18546 * 14 13 12 27 27 H 1.08991 * 110.41558 * 319.73615 * 14 13 12 28 28 H 1.09003 * 110.32953 * 264.95862 * 15 14 13 29 29 H 1.09006 * 110.32774 * 142.75025 * 15 14 13 30 30 H 1.08997 * 109.46876 * 306.45281 * 18 16 15 31 31 H 1.09001 * 109.47200 * 186.45277 * 18 16 15 32 32 H 0.96696 * 114.00048 * 179.97438 * 19 18 16 33 33 H 1.08996 * 110.41575 * 40.25912 * 20 13 12 34 34 H 1.09000 * 110.41460 * 277.81431 * 20 13 12 35 35 H 1.07995 * 120.80334 * 180.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6962 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6964 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0502 -1.2333 0.2840 9 6 1.3521 -2.4055 -0.3696 10 6 1.8304 -3.6528 0.0752 11 7 1.2135 -4.7621 -0.2670 12 6 0.1365 -4.7513 -1.0430 13 7 -0.4725 -5.9484 -1.3780 14 6 -1.8793 -5.9814 -0.9019 15 6 -2.2364 -7.4823 -0.8474 16 6 -0.8844 -8.2109 -0.7018 17 1 -0.7187 -8.8745 -1.5505 18 6 -0.8458 -9.0032 0.6065 19 8 -1.7994 -10.0659 0.5482 20 6 0.1757 -7.0888 -0.6807 21 6 -0.3964 -3.5515 -1.5228 22 17 -1.8101 -3.5631 -2.5303 23 6 0.2040 -2.3691 -1.1922 24 1 -0.4850 0.8400 -0.0004 25 1 2.7065 -3.6981 0.7052 26 1 -2.5306 -5.4610 -1.6042 27 1 -1.9556 -5.5363 0.0901 28 1 -2.7334 -7.7870 -1.7684 29 1 -2.8725 -7.6892 0.0133 30 1 -1.0887 -8.3424 1.4386 31 1 0.1518 -9.4178 0.7509 32 1 -1.8295 -10.6115 1.3459 33 1 0.4211 -6.8170 0.3459 34 1 1.0717 -7.4024 -1.2164 35 1 -0.1898 -1.4297 -1.5507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166551237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -39.634590 kcal Electronic energy + Delta-G solvation = -19840.248544 eV Core-core repulsion = 16669.905626 eV Total energy + Delta-G solvation = -3170.342919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25914 -39.41372 -37.49023 -37.26987 -35.94402 -33.50442 -32.52505 -30.86226 -30.20469 -27.20638 -25.87593 -23.79143 -23.59619 -22.05905 -20.80729 -19.41339 -18.19586 -18.11702 -17.43936 -17.18809 -16.72118 -16.02962 -15.36954 -15.21765 -15.04794 -14.82182 -14.36823 -13.98158 -13.74713 -13.42927 -13.23262 -13.16538 -13.00449 -12.86501 -12.56378 -12.42469 -12.17606 -12.08876 -11.94849 -11.52083 -11.26247 -11.14509 -10.82009 -10.52666 -10.10131 -10.04405 -9.03532 -8.72905 -6.42248 0.52371 0.83559 1.39380 1.40311 1.49926 1.53690 2.16561 2.54761 2.94828 3.31456 3.55197 3.67100 3.80284 4.11731 4.13834 4.33333 4.43343 4.50775 4.59823 4.64937 4.66320 4.71585 4.85908 4.94620 5.00157 5.09728 5.13092 5.18353 5.20347 5.31962 5.60984 5.69964 5.94340 6.21588 6.44633 6.67852 6.68836 6.93211 7.48091 8.17795 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.004568 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.519390 B = 6127.536188 C = 6752.970040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.095 0.905 9 C 0.038 3.962 10 C -0.017 4.017 11 N -0.479 5.479 12 C 0.154 3.846 13 N -0.446 5.446 14 C 0.028 3.972 15 C -0.103 4.103 16 C -0.090 4.090 17 H 0.087 0.913 18 C 0.091 3.909 19 O -0.586 6.586 20 C 0.062 3.938 21 C -0.056 4.056 22 Cl -0.077 7.077 23 C -0.135 4.135 24 H 0.294 0.706 25 H 0.150 0.850 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -8.793 1.277 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.496 4.496 8 H 0.113 0.887 9 C 0.033 3.967 10 C -0.179 4.179 11 N -0.190 5.190 12 C -0.077 4.077 13 N -0.166 5.166 14 C -0.099 4.099 15 C -0.141 4.141 16 C -0.109 4.109 17 H 0.106 0.894 18 C 0.013 3.987 19 O -0.394 6.394 20 C -0.066 4.066 21 C -0.086 4.086 22 Cl -0.049 7.049 23 C -0.162 4.162 24 H 0.105 0.895 25 H 0.167 0.833 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.247 0.753 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.579 -9.258 0.327 9.616 hybrid contribution -0.032 1.685 0.952 1.935 sum -2.611 -7.574 1.279 8.112 Atomic orbital electron populations 1.69842 1.09220 1.31487 1.33265 1.26873 0.95476 1.04919 0.90875 0.85137 0.78712 0.74977 0.80360 1.18372 1.19377 1.17855 1.19801 0.98853 0.91396 1.39566 0.88676 1.18713 0.92222 0.94858 0.90938 1.22697 1.03155 0.87203 1.04799 1.67124 1.08469 1.32259 1.11187 1.19145 0.96837 0.89501 1.02229 1.62609 1.02967 1.00287 1.50725 1.23441 0.89562 0.98577 0.98283 1.22265 0.96990 0.91699 1.03102 1.21883 0.94641 0.95685 0.98710 0.89435 1.22083 0.92160 0.88582 0.95873 1.86413 1.61718 1.45731 1.45525 1.22765 0.96839 0.89014 0.97971 1.21104 0.92438 0.94815 1.00283 1.98231 1.39810 1.98555 1.68301 1.21292 0.98927 0.95971 0.99961 0.89457 0.83252 0.89191 0.95692 0.90262 0.90176 0.93730 0.92177 0.75288 0.93121 0.90532 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.66 10.92 21.82 0.24 -39.42 16 2 C 0.04 1.66 5.17 85.23 0.44 2.10 16 3 Si 0.99 34.93 29.59 68.60 2.03 36.96 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 6 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 7 C -0.47 -22.99 9.07 23.39 0.21 -22.78 16 8 H 0.10 4.36 7.90 -2.91 -0.02 4.34 16 9 C 0.04 1.94 5.59 -21.18 -0.12 1.82 16 10 C -0.02 -0.81 10.97 85.37 0.94 0.13 16 11 N -0.48 -22.53 8.42 -191.08 -1.61 -24.14 16 12 C 0.15 7.10 6.24 133.32 0.83 7.93 16 13 N -0.45 -17.57 5.14 -687.56 -3.54 -21.11 16 14 C 0.03 0.98 5.49 86.45 0.47 1.46 16 15 C -0.10 -2.85 6.50 31.49 0.20 -2.65 16 16 C -0.09 -2.42 3.35 -9.90 -0.03 -2.46 16 17 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 18 C 0.09 1.99 6.11 71.98 0.44 2.43 16 19 O -0.59 -11.74 13.44 -148.98 -2.00 -13.74 16 20 C 0.06 2.08 5.39 86.45 0.47 2.54 16 21 C -0.06 -2.64 6.11 22.28 0.14 -2.51 16 22 Cl -0.08 -3.15 25.51 -2.72 -0.07 -3.22 16 23 C -0.13 -6.90 8.53 22.65 0.19 -6.71 16 24 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 25 H 0.15 6.49 8.06 -2.91 -0.02 6.47 16 26 H 0.09 3.17 5.60 -2.39 -0.01 3.16 16 27 H 0.02 0.95 7.97 -2.39 -0.02 0.93 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.05 7.66 -2.38 -0.02 2.04 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.40 4.07 9.12 -74.06 -0.68 3.40 16 33 H 0.05 1.84 6.94 -2.39 -0.02 1.82 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.13 6.71 6.19 -2.91 -0.02 6.69 16 Total: -1.00 -57.69 301.29 -0.32 -58.00 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.45 Total: 25.35 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.18 Total: -18.69 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -4.91 Total: -84.66 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -2.00 Total: -13.74 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.07 Total: -3.22 kcal Total: -57.69 -0.32 -58.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166551237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.369 kcal (2) G-P(sol) polarization free energy of solvation -57.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds