Wall clock time and date at job start Tue Mar 31 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09008 * 109.50047 * 60.35896 * 9 7 2 11 11 C 1.53116 * 109.50633 * 300.28045 * 9 7 2 12 12 C 1.53127 * 109.16202 * 182.40391 * 11 9 7 13 13 C 1.53038 * 109.27743 * 57.65342 * 12 11 9 14 14 N 1.46850 * 109.52454 * 300.82299 * 13 12 11 15 15 C 1.39251 * 111.00045 * 185.83975 * 14 13 12 16 16 C 1.39006 * 119.69731 * 303.95317 * 15 14 13 17 17 C 1.38402 * 119.14350 * 179.97438 * 16 15 14 18 18 C 1.38784 * 118.52869 * 0.02562 * 17 16 15 19 19 C 1.38239 * 119.31275 * 0.02562 * 18 17 16 20 20 Cl 1.73596 * 119.59605 * 179.97438 * 19 18 17 21 21 N 1.32097 * 120.80696 * 359.72063 * 19 18 17 22 22 O 1.41604 * 119.20159 * 180.27728 * 21 19 18 23 23 C 1.46842 * 111.19886 * 61.73895 * 14 13 12 24 24 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.52469 * 302.30911 * 11 9 7 26 26 H 1.08996 * 109.52149 * 62.50030 * 11 9 7 27 27 H 1.08994 * 109.50318 * 177.59839 * 12 11 9 28 28 H 1.08999 * 109.49792 * 297.67592 * 12 11 9 29 29 H 1.08996 * 109.46008 * 60.83529 * 13 12 11 30 30 H 1.08996 * 109.46333 * 180.80862 * 13 12 11 31 31 H 1.08007 * 120.42596 * 359.97438 * 16 15 14 32 32 H 1.07998 * 120.73974 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.34480 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.46518 * 178.23974 * 23 14 13 35 35 H 1.09008 * 109.46263 * 58.27694 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8792 -0.6832 0.8843 11 6 4.0175 -0.4698 -1.2564 12 6 5.5475 -0.5266 -1.2857 13 6 5.9994 -1.9885 -1.2586 14 7 5.4907 -2.6370 -0.0432 15 6 5.9918 -3.9304 0.0794 16 6 5.7998 -4.8438 -0.9508 17 6 6.3031 -6.1261 -0.8171 18 6 6.9837 -6.4530 0.3474 19 6 7.1376 -5.4958 1.3328 20 17 7.9870 -5.8969 2.7926 21 7 6.6504 -4.2781 1.1750 22 8 6.8328 -3.3224 2.2039 23 6 4.0226 -2.6365 -0.0158 24 1 -0.4850 0.8400 -0.0004 25 1 3.6179 -0.9566 -2.1460 26 1 3.6921 0.5702 -1.2318 27 1 5.9120 -0.0498 -2.1955 28 1 5.9476 -0.0052 -0.4162 29 1 5.6102 -2.5052 -2.1358 30 1 7.0884 -2.0322 -1.2649 31 1 5.2647 -4.5564 -1.8439 32 1 6.1684 -6.8565 -1.6012 33 1 7.3889 -7.4450 0.4823 34 1 3.6758 -3.1508 0.8806 35 1 3.6427 -3.1503 -0.8989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:41 Heat of formation + Delta-G solvation = 78.524650 kcal Electronic energy + Delta-G solvation = -20267.533232 eV Core-core repulsion = 17102.314082 eV Total energy + Delta-G solvation = -3165.219150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60774 -38.62172 -36.98468 -34.74387 -34.23231 -32.30517 -30.47501 -30.03634 -29.48326 -25.17595 -25.10967 -24.09436 -22.55028 -21.42699 -19.09707 -18.29367 -17.59386 -16.93016 -16.43573 -15.87565 -15.63459 -15.07694 -14.58970 -14.30221 -13.92503 -13.36355 -13.07347 -12.76387 -12.64700 -12.42361 -12.32244 -12.03071 -11.44822 -11.42838 -11.28761 -11.13029 -10.66713 -10.24665 -10.07571 -9.83202 -9.44758 -9.22595 -9.01556 -8.95193 -8.54755 -8.37663 -8.24348 -6.09840 -4.10089 0.22331 0.41998 1.25808 2.42463 2.82656 3.27147 3.41165 3.45521 3.82108 4.16013 4.19615 4.41312 4.42408 4.65366 5.15846 5.20515 5.23789 5.32149 5.44544 5.54068 5.60661 5.72732 5.87793 6.07653 6.10766 6.22316 6.39826 6.50720 6.69278 6.70860 6.88149 7.07023 7.11660 7.47806 7.57850 7.74552 8.45827 8.91265 9.52262 11.03056 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.004707 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.907773 B = 5946.656197 C = 6060.642486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.042 0.958 11 C -0.124 4.124 12 C -0.120 4.120 13 C 0.073 3.927 14 N -0.495 5.495 15 C 0.305 3.695 16 C -0.145 4.145 17 C -0.065 4.065 18 C -0.121 4.121 19 C 0.136 3.864 20 Cl 0.012 6.988 21 N -0.115 5.115 22 O -0.498 6.498 23 C 0.089 3.911 24 H 0.264 0.736 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.098 -14.560 -5.930 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.002 3.998 10 H 0.061 0.939 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.053 4.053 14 N -0.218 5.218 15 C 0.085 3.915 16 C -0.167 4.167 17 C -0.091 4.091 18 C -0.141 4.141 19 C -0.017 4.017 20 Cl 0.041 6.959 21 N 0.203 4.797 22 O -0.556 6.556 23 C -0.035 4.035 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.091 0.909 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.213 -13.903 -5.078 21.226 hybrid contribution 0.208 0.600 -0.303 0.704 sum 15.421 -13.303 -5.381 21.065 Atomic orbital electron populations 1.69889 1.06299 1.27075 1.50517 1.24942 0.94663 0.99035 0.94189 0.86860 0.80284 0.83427 0.77886 1.20591 1.22458 1.18595 1.20891 0.88293 0.94636 1.51623 0.90849 1.19194 0.96249 0.90066 0.94336 0.93943 1.22071 0.92341 1.00787 1.00992 1.21677 0.98347 0.94018 1.01733 1.22151 0.99002 0.96167 0.87994 1.58655 1.11856 1.11042 1.40289 1.19316 0.93573 0.92732 0.85844 1.22400 1.00841 0.93251 1.00214 1.21653 0.94044 0.96370 0.97053 1.21549 1.00918 0.99707 0.91934 1.21809 1.00124 0.86577 0.93156 1.98445 1.73431 1.91460 1.32590 1.43625 1.16112 1.07820 1.12131 1.97698 1.87287 1.40510 1.30081 1.22297 0.79323 1.01358 1.00491 0.92575 0.92170 0.93012 0.91851 0.91114 0.94015 0.91296 0.81656 0.82156 0.81396 0.90929 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 3 Si 0.89 22.04 24.35 -169.99 -4.14 17.90 16 4 H -0.28 -6.64 6.88 56.52 0.39 -6.25 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -14.22 9.15 -34.44 -0.32 -14.54 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.04 1.10 7.21 -51.92 -0.37 0.73 16 11 C -0.12 -2.57 4.73 -26.61 -0.13 -2.70 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C 0.07 1.12 5.05 -3.83 -0.02 1.10 16 14 N -0.50 -9.12 4.17 -173.17 -0.72 -9.85 16 15 C 0.30 4.83 5.52 -154.76 -0.85 3.98 16 16 C -0.15 -1.51 8.73 -39.24 -0.34 -1.85 16 17 C -0.07 -0.46 10.16 -39.32 -0.40 -0.86 16 18 C -0.12 -0.98 9.87 -39.38 -0.39 -1.37 16 19 C 0.14 1.81 7.17 -17.44 -0.13 1.68 16 20 Cl 0.01 0.15 28.25 -51.86 -1.46 -1.31 16 21 N -0.12 -2.05 3.60 -9.49 -0.03 -2.08 16 22 O -0.50 -12.02 18.91 -11.47 -0.22 -12.23 16 23 C 0.09 1.80 4.43 -3.84 -0.02 1.78 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.15 3.33 -51.93 -0.17 0.98 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.53 7.12 -51.93 -0.37 0.16 16 30 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.17 1.38 7.10 -52.48 -0.37 1.01 16 32 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.07 1.57 8.11 -51.93 -0.42 1.15 16 35 H 0.04 0.72 7.76 -51.92 -0.40 0.32 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -36.77 297.54 -8.58 -45.35 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.25 Total: -3.09 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -3.02 Total: -12.65 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.02 Total: -38.45 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.22 Total: -12.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.46 Total: -1.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.77 -8.58 -45.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.879 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds