Wall clock time and date at job start Tue Mar 31 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00147 * 2 1 4 4 H 1.48506 * 109.47278 * 264.95926 * 3 2 1 5 5 H 1.48507 * 109.47291 * 24.95549 * 3 2 1 6 6 H 1.48501 * 109.47442 * 144.95604 * 3 2 1 7 7 C 1.37879 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99793 * 4.30585 * 7 2 1 9 9 C 1.50705 * 119.99991 * 184.30508 * 7 2 1 10 10 H 1.09006 * 109.50283 * 335.31216 * 9 7 2 11 11 C 1.53117 * 109.50022 * 95.39011 * 9 7 2 12 12 C 1.53123 * 109.15710 * 177.63770 * 11 9 7 13 13 C 1.53035 * 109.27761 * 302.34158 * 12 11 9 14 14 N 1.46851 * 109.52042 * 59.18001 * 13 12 11 15 15 C 1.39258 * 110.99751 * 174.15871 * 14 13 12 16 16 C 1.39006 * 119.69442 * 65.04810 * 15 14 13 17 17 C 1.38412 * 119.14060 * 179.97438 * 16 15 14 18 18 C 1.38775 * 118.52913 * 359.97438 * 17 16 15 19 19 C 1.38244 * 119.31185 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 119.59492 * 179.97438 * 19 18 17 21 21 N 1.32094 * 120.81305 * 359.71853 * 19 18 17 22 22 O 1.41595 * 119.20614 * 180.27997 * 21 19 18 23 23 C 1.46838 * 111.20235 * 298.25932 * 14 13 12 24 24 H 0.97003 * 119.99795 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52548 * 57.73098 * 11 9 7 26 26 H 1.09004 * 109.57683 * 297.56637 * 11 9 7 27 27 H 1.08996 * 109.50869 * 62.28720 * 12 11 9 28 28 H 1.09004 * 109.50205 * 182.40326 * 12 11 9 29 29 H 1.08992 * 109.46760 * 179.19772 * 13 12 11 30 30 H 1.09001 * 109.46781 * 299.17006 * 13 12 11 31 31 H 1.08002 * 120.42727 * 0.02562 * 16 15 14 32 32 H 1.07999 * 120.73615 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.34484 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.46502 * 301.72718 * 23 14 13 35 35 H 1.09000 * 109.46485 * 181.76099 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6033 1.9849 -1.3947 5 1 1.3974 2.6812 0.5907 6 1 3.4894 1.4733 0.8039 7 6 2.0045 -1.1941 0.0005 8 1 1.4668 -2.1280 -0.0693 9 6 3.5084 -1.1959 0.0985 10 1 3.8983 -0.2474 -0.2712 11 6 3.9252 -1.3853 1.5596 12 6 5.4530 -1.4451 1.6427 13 6 5.9628 -2.5852 0.7582 14 7 5.5386 -2.3573 -0.6291 15 6 6.0954 -3.3057 -1.4833 16 6 5.7405 -4.6433 -1.3523 17 6 6.3005 -5.5762 -2.2078 18 6 7.1997 -5.1378 -3.1695 19 6 7.5082 -3.7923 -3.2444 20 17 8.6327 -3.2359 -4.4443 21 7 6.9540 -2.9240 -2.4174 22 8 7.2900 -1.5530 -2.5281 23 6 4.0746 -2.3431 -0.7412 24 1 -0.4850 0.8401 -0.0004 25 1 3.5030 -2.3148 1.9414 26 1 3.5606 -0.5481 2.1549 27 1 5.8735 -0.5006 1.2973 28 1 5.7547 -1.6225 2.6750 29 1 7.0512 -2.6215 0.8039 30 1 5.5529 -3.5310 1.1125 31 1 5.0362 -4.9504 -0.5933 32 1 6.0433 -6.6221 -2.1286 33 1 7.6538 -5.8404 -3.8525 34 1 3.6734 -3.2900 -0.3798 35 1 3.7916 -2.2037 -1.7846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:45 Heat of formation + Delta-G solvation = 70.118969 kcal Electronic energy + Delta-G solvation = -20238.363308 eV Core-core repulsion = 17072.779660 eV Total energy + Delta-G solvation = -3165.583647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58564 -38.55990 -36.96952 -34.72862 -34.07958 -32.36406 -30.44698 -29.99293 -29.45962 -25.18897 -25.05818 -24.03450 -22.43242 -21.46171 -18.96728 -18.28616 -17.53815 -17.04043 -16.46968 -15.86808 -15.53307 -15.06290 -14.35139 -14.15851 -13.99004 -13.31785 -12.97634 -12.71562 -12.57499 -12.47787 -12.26775 -12.01535 -11.43434 -11.41176 -11.23058 -11.07853 -10.75575 -10.29486 -9.92699 -9.65369 -9.63422 -9.33320 -9.01836 -8.94951 -8.53943 -8.33420 -8.25249 -6.11369 -4.12419 0.23876 0.43383 1.26661 2.43862 2.84234 3.35624 3.42844 3.49172 3.85031 4.17697 4.21800 4.43977 4.44227 4.67669 5.16179 5.24260 5.29208 5.34283 5.46437 5.57342 5.65648 5.76935 5.90947 6.10657 6.22231 6.27322 6.44084 6.56408 6.71740 6.77922 6.93528 7.11696 7.28232 7.42811 7.53760 7.74966 8.45212 8.90996 9.52227 11.01087 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.005003 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.879609 B = 5594.865700 C = 5859.393513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.045 0.955 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.075 3.925 14 N -0.497 5.497 15 C 0.305 3.695 16 C -0.144 4.144 17 C -0.066 4.066 18 C -0.121 4.121 19 C 0.135 3.865 20 Cl 0.011 6.989 21 N -0.115 5.115 22 O -0.499 6.499 23 C 0.082 3.918 24 H 0.265 0.735 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.037 0.963 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 -15.152 -2.895 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.063 0.937 11 C -0.152 4.152 12 C -0.159 4.159 13 C -0.051 4.051 14 N -0.220 5.220 15 C 0.085 3.915 16 C -0.166 4.166 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.017 4.017 20 Cl 0.040 6.960 21 N 0.203 4.797 22 O -0.557 6.557 23 C -0.043 4.043 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.056 0.944 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.658 -14.087 -3.165 20.575 hybrid contribution 0.256 0.476 -0.048 0.542 sum 14.914 -13.612 -3.213 20.446 Atomic orbital electron populations 1.69898 1.06355 1.27180 1.50118 1.25013 0.94667 0.99066 0.93874 0.86868 0.80178 0.83346 0.79285 1.19970 1.21685 1.18601 1.20851 0.88484 0.94609 1.51411 0.90935 1.19178 0.96048 0.94123 0.90476 0.93662 1.21910 0.91656 1.01308 1.00284 1.21714 0.98686 0.98222 0.97259 1.22117 0.99466 0.98396 0.85074 1.58738 1.12329 1.45250 1.05695 1.19368 0.91023 0.90235 0.90868 1.22418 1.01345 0.91154 1.01646 1.21658 0.93674 1.01324 0.92500 1.21545 0.99704 0.91865 1.00979 1.21813 0.97166 0.89562 0.93199 1.98444 1.56629 1.90479 1.50457 1.43637 1.13704 1.12717 1.09605 1.97691 1.84293 0.81529 1.92211 1.22542 0.79312 1.00243 1.02156 0.92543 0.92874 0.92354 0.91282 0.92002 0.91492 0.94201 0.81637 0.82157 0.81410 0.94439 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 22.11 26.98 -169.99 -4.59 17.53 16 4 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.38 6.83 56.52 0.39 -5.99 16 7 C -0.52 -13.95 8.87 -34.44 -0.31 -14.26 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.02 0.49 1.92 -91.69 -0.18 0.31 16 10 H 0.05 1.15 5.30 -51.93 -0.28 0.87 16 11 C -0.11 -2.27 5.27 -26.61 -0.14 -2.41 16 12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 13 C 0.08 1.18 5.17 -3.83 -0.02 1.16 16 14 N -0.50 -9.25 4.17 -173.18 -0.72 -9.97 16 15 C 0.30 4.90 5.52 -154.75 -0.85 4.04 16 16 C -0.14 -1.54 8.70 -39.23 -0.34 -1.88 16 17 C -0.07 -0.48 10.16 -39.32 -0.40 -0.88 16 18 C -0.12 -1.00 9.87 -39.38 -0.39 -1.39 16 19 C 0.14 1.82 7.17 -17.44 -0.13 1.69 16 20 Cl 0.01 0.14 28.25 -51.86 -1.46 -1.32 16 21 N -0.11 -2.06 3.60 -9.48 -0.03 -2.10 16 22 O -0.50 -12.11 18.91 -11.47 -0.22 -12.33 16 23 C 0.08 1.64 4.36 -3.84 -0.02 1.62 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.04 0.52 7.57 -51.93 -0.39 0.13 16 31 H 0.17 1.46 7.10 -52.49 -0.37 1.09 16 32 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.04 0.67 7.26 -51.93 -0.38 0.29 16 35 H 0.07 1.56 8.11 -51.93 -0.42 1.13 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -36.37 303.98 -9.07 -45.43 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.37 Total: -3.45 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.03 Total: -12.13 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.02 Total: -38.31 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.22 Total: -12.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.53 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.46 Total: -1.32 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.37 -9.07 -45.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.554 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds