Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99907 * 2 1 4 4 O 1.20821 * 120.00292 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00099 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46696 * 59.99908 * 5 3 2 7 7 C 1.52999 * 109.46866 * 300.00187 * 5 3 2 8 8 S 1.81398 * 109.46836 * 179.97438 * 7 5 3 9 9 N 1.46500 * 109.47219 * 179.97438 * 5 3 2 10 10 C 1.38085 * 120.00006 * 205.00068 * 9 5 3 11 11 N 1.32268 * 119.90323 * 0.02562 * 10 9 5 12 12 C 1.31975 * 121.86296 * 179.72320 * 11 10 9 13 13 C 1.38685 * 121.44530 * 0.55399 * 12 11 10 14 14 C 1.38003 * 119.62595 * 359.44177 * 13 12 11 15 15 C 1.40997 * 118.28398 * 0.27473 * 14 13 12 16 16 C 1.41015 * 120.70549 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00443 * 150.05404 * 16 15 14 18 18 C 1.39956 * 120.00280 * 330.04646 * 16 15 14 19 19 N 1.30863 * 120.00428 * 162.11447 * 18 16 15 20 20 Si 1.86800 * 119.99578 * 342.11960 * 18 16 15 21 21 H 1.48500 * 109.47173 * 95.37214 * 20 18 16 22 22 H 1.48500 * 109.47097 * 215.37242 * 20 18 16 23 23 H 1.48508 * 109.47220 * 335.37241 * 20 18 16 24 24 H 1.09000 * 109.47410 * 300.00298 * 1 2 3 25 25 H 1.08994 * 109.47009 * 60.00396 * 1 2 3 26 26 H 1.09001 * 109.46949 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47235 * 299.99391 * 7 5 3 28 28 H 1.08993 * 109.47432 * 59.99370 * 7 5 3 29 29 H 1.34500 * 103.00249 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99830 * 25.00583 * 9 5 3 31 31 H 1.08004 * 119.27529 * 180.29355 * 12 11 10 32 32 H 1.08005 * 120.18434 * 179.71571 * 13 12 11 33 33 H 1.08005 * 120.85662 * 180.29907 * 14 13 12 34 34 H 0.96996 * 120.00345 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5815 1.2502 8 16 5.9244 0.6759 1.2505 9 7 3.9817 2.6798 -0.0002 10 6 5.2170 3.0342 -0.5053 11 7 6.0235 2.1039 -0.9884 12 6 7.2098 2.3999 -1.4853 13 6 7.6763 3.7055 -1.5154 14 6 6.8840 4.7245 -1.0273 15 6 5.6168 4.3937 -0.5048 16 6 4.7653 5.3945 0.0068 17 1 3.6937 5.2707 -0.0459 18 6 5.3087 6.5484 0.5830 19 7 4.5662 7.6149 0.7370 20 14 7.0941 6.5661 1.1322 21 1 7.9375 7.1445 0.0554 22 1 7.2260 7.3899 2.3607 23 1 7.5382 5.1779 1.4170 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.7228 1.0758 2.1399 28 1 3.8038 -0.4637 1.2503 29 1 6.2604 0.0381 2.3860 30 1 3.3890 3.3609 0.3542 31 1 7.8326 1.6073 -1.8733 32 1 8.6525 3.9241 -1.9226 33 1 7.2255 5.7490 -1.0453 34 1 4.9429 8.4147 1.1361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167618451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -35.789060 kcal Electronic energy + Delta-G solvation = -20191.096436 eV Core-core repulsion = 17022.963979 eV Total energy + Delta-G solvation = -3168.132458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55299 -38.75477 -36.67906 -35.28320 -33.84530 -31.34911 -31.12872 -28.29449 -27.73743 -25.32872 -24.40487 -22.11048 -20.96142 -20.24871 -17.99065 -17.40382 -17.18721 -16.91790 -16.30505 -16.11288 -15.38196 -14.86250 -14.26287 -14.03067 -13.75580 -13.53123 -13.22704 -13.15345 -12.70243 -12.45474 -12.11942 -12.07599 -11.92231 -11.71722 -11.31446 -10.85186 -10.75358 -10.42529 -10.24592 -9.89456 -9.69720 -9.40555 -9.26025 -8.14601 -8.00021 -7.36476 -6.89939 -6.79555 -4.32810 1.86778 2.26256 2.57801 2.68640 2.81574 3.13709 3.24111 3.27357 3.38560 4.02365 4.15250 4.63731 4.75542 5.01087 5.02400 5.10592 5.17446 5.42521 5.47292 5.55894 5.83768 5.89591 6.18132 6.29343 6.43950 6.57561 6.84316 7.09740 7.35723 7.61885 7.71599 7.83409 8.04588 8.33626 8.36519 8.70634 8.80397 9.55835 10.12145 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.006677 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.705362 B = 4192.340575 C = 5040.515307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.489 6.489 5 C 0.195 3.805 6 H 0.130 0.870 7 C -0.096 4.096 8 S -0.126 6.126 9 N -0.709 5.709 10 C 0.329 3.671 11 N -0.501 5.501 12 C 0.011 3.989 13 C -0.167 4.167 14 C -0.197 4.197 15 C 0.024 3.976 16 C -0.442 4.442 17 H 0.091 0.909 18 C 0.086 3.914 19 N -0.810 5.810 20 Si 0.907 3.093 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.242 1.242 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.003 0.997 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -12.261 0.687 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.301 3.699 4 O -0.375 6.375 5 C 0.085 3.915 6 H 0.147 0.853 7 C -0.247 4.247 8 S 0.025 5.975 9 N -0.351 5.351 10 C 0.090 3.910 11 N -0.219 5.219 12 C -0.141 4.141 13 C -0.190 4.190 14 C -0.223 4.223 15 C 0.017 3.983 16 C -0.472 4.472 17 H 0.109 0.891 18 C -0.132 4.132 19 N -0.435 5.435 20 Si 0.734 3.266 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.165 1.165 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.110 0.890 29 H -0.032 1.032 30 H 0.258 0.742 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.815 -12.574 0.549 12.897 hybrid contribution -0.187 0.884 1.384 1.653 sum -3.002 -11.690 1.933 12.223 Atomic orbital electron populations 1.23270 0.76384 1.03545 1.02714 1.86501 1.23355 1.33248 1.84271 1.23909 0.91909 0.81563 0.72516 1.90703 1.66503 1.36206 1.44085 1.19629 0.84828 0.87377 0.99667 0.85302 1.23699 0.96085 1.03497 1.01429 1.89292 1.04372 1.75657 1.28168 1.43626 1.17278 1.04237 1.69941 1.18136 0.86682 0.88712 0.97453 1.66191 1.05835 1.35907 1.13987 1.21327 0.92877 0.94156 1.05753 1.21294 0.99425 0.94489 1.03747 1.21010 0.96997 0.97816 1.06512 1.17950 0.93625 0.91009 0.95757 1.19128 0.95601 0.99250 1.33228 0.89109 1.26064 1.00109 0.93779 0.93287 1.69707 1.38963 1.01927 1.32914 0.86343 0.82127 0.80439 0.77667 1.19793 1.22041 1.16546 0.91882 0.91775 0.88132 0.90098 0.88961 1.03242 0.74204 0.85802 0.88293 0.87594 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.49 10.47 -39.24 -0.41 -4.90 16 3 C 0.46 7.10 7.32 36.01 0.26 7.36 16 4 O -0.49 -8.91 15.59 -18.75 -0.29 -9.20 16 5 C 0.20 3.18 2.83 -69.08 -0.20 2.98 16 6 H 0.13 2.11 7.53 -51.93 -0.39 1.72 16 7 C -0.10 -1.40 5.93 37.16 0.22 -1.18 16 8 S -0.13 -2.19 21.79 -107.50 -2.34 -4.53 16 9 N -0.71 -14.24 4.93 -54.61 -0.27 -14.50 16 10 C 0.33 7.40 6.51 -155.03 -1.01 6.39 16 11 N -0.50 -10.65 6.34 -11.86 -0.08 -10.72 16 12 C 0.01 0.22 11.17 -17.33 -0.19 0.02 16 13 C -0.17 -3.55 10.08 -39.50 -0.40 -3.95 16 14 C -0.20 -4.68 7.27 -38.62 -0.28 -4.96 16 15 C 0.02 0.59 5.12 -106.48 -0.55 0.05 16 16 C -0.44 -11.55 8.94 -37.89 -0.34 -11.89 16 17 H 0.09 2.48 7.03 -52.49 -0.37 2.11 16 18 C 0.09 2.23 5.42 -17.32 -0.09 2.13 16 19 N -0.81 -21.45 13.93 55.55 0.77 -20.67 16 20 Si 0.91 20.77 24.53 -169.99 -4.17 16.60 16 21 H -0.27 -6.04 6.71 56.52 0.38 -5.66 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.24 -5.75 6.85 56.52 0.39 -5.36 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 28 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 29 H 0.00 0.05 9.07 97.61 0.89 0.93 16 30 H 0.42 8.86 6.08 -40.82 -0.25 8.61 16 31 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 32 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.11 2.51 4.82 -52.48 -0.25 2.26 16 34 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -28.63 298.99 -6.29 -34.91 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.50 Total: 10.16 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.50 Total: -1.65 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.43 Total: -45.90 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.70 Total: -14.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.60 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.34 Total: -4.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.63 -6.29 -34.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167618451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.875 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds