Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47370 * 239.99880 * 3 2 1 5 5 H 1.48490 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46622 * 120.00463 * 3 2 1 7 7 C 1.37870 * 119.99804 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85160 * 180.02562 * 7 2 1 9 9 C 1.53242 * 108.48359 * 231.36388 * 8 7 2 10 10 C 1.52951 * 109.40159 * 305.26158 * 9 8 7 11 11 H 1.09004 * 109.41142 * 303.63805 * 10 9 8 12 12 N 1.46499 * 109.41524 * 183.77418 * 10 9 8 13 13 C 1.39774 * 119.99633 * 85.14019 * 12 10 9 14 14 C 1.38830 * 120.49337 * 359.44148 * 13 12 10 15 15 N 1.31933 * 120.65925 * 179.73238 * 14 13 12 16 16 O 1.41604 * 119.10111 * 180.27158 * 15 14 13 17 17 C 1.32003 * 121.79454 * 0.53470 * 15 14 13 18 18 C 1.38196 * 120.92753 * 359.75658 * 17 15 14 19 19 C 1.38653 * 119.23407 * 359.97194 * 18 17 15 20 20 Cl 1.73600 * 120.81755 * 179.97438 * 19 18 17 21 21 C 1.52963 * 109.75864 * 63.70216 * 10 9 8 22 22 C 1.51273 * 120.85370 * 359.97438 * 7 2 1 23 23 H 0.97001 * 119.99386 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.62616 * 351.03835 * 8 7 2 25 25 H 1.09003 * 109.63230 * 111.41280 * 8 7 2 26 26 H 1.09004 * 109.42497 * 185.31623 * 9 8 7 27 27 H 1.09000 * 109.54328 * 65.27665 * 9 8 7 28 28 H 0.97001 * 119.99790 * 264.85555 * 12 10 9 29 29 H 1.08004 * 119.66784 * 359.97438 * 14 13 12 30 30 H 1.08005 * 119.53741 * 179.72926 * 17 15 14 31 31 H 1.07992 * 120.38532 * 179.97438 * 18 17 15 32 32 H 1.08996 * 109.47839 * 56.34793 * 21 10 9 33 33 H 1.09000 * 109.47990 * 176.38867 * 21 10 9 34 34 H 1.08997 * 109.62203 * 8.95931 * 22 7 2 35 35 H 1.09003 * 109.62811 * 248.39474 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2165 0.0000 9 6 3.9897 -2.1304 -1.1357 10 6 3.3403 -3.5068 -0.9840 11 1 3.5739 -3.9111 0.0010 12 7 3.8606 -4.4071 -2.0160 13 6 5.0564 -5.0984 -1.8020 14 6 5.7653 -4.9307 -0.6202 15 7 6.8917 -5.5855 -0.4125 16 8 7.5849 -5.3939 0.8072 17 6 7.3926 -6.4106 -1.3130 18 6 6.7477 -6.6253 -2.5163 19 6 5.5578 -5.9620 -2.7746 20 17 4.7137 -6.2007 -4.2726 21 6 1.8233 -3.3824 -1.1356 22 6 1.2677 -2.5152 -0.0005 23 1 -0.4849 0.8401 0.0004 24 1 3.8983 -0.2079 -0.1591 25 1 3.8773 -1.5974 0.9557 26 1 5.0740 -2.2330 -1.0909 27 1 3.7047 -1.6976 -2.0946 28 1 3.3730 -4.5266 -2.8460 29 1 5.3889 -4.2604 0.1385 30 1 8.3198 -6.9247 -1.1067 31 1 7.1656 -7.3019 -3.2469 32 1 1.5906 -2.9193 -2.0945 33 1 1.3710 -4.3731 -1.0908 34 1 0.2036 -2.3409 -0.1600 35 1 1.4199 -3.0193 0.9538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = 37.984836 kcal Electronic energy + Delta-G solvation = -19886.639238 eV Core-core repulsion = 16719.662150 eV Total energy + Delta-G solvation = -3166.977088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33133 -38.17175 -37.16131 -35.28115 -33.66092 -32.09633 -30.46274 -29.82638 -29.37550 -27.20087 -24.32613 -23.66320 -21.87945 -21.65417 -19.79611 -18.37608 -17.64313 -16.87279 -16.25390 -15.63361 -15.53570 -15.07600 -14.71244 -14.52285 -13.64334 -13.31743 -13.09420 -12.98050 -12.59725 -12.44874 -12.11161 -11.88674 -11.51347 -11.35112 -11.18029 -10.81660 -10.71594 -10.40976 -10.30544 -10.14579 -9.78593 -9.28438 -9.15926 -8.92120 -8.60659 -8.58800 -7.84052 -6.23229 -4.15773 0.38932 0.71684 1.60902 2.51045 3.03523 3.18307 3.23164 3.29472 3.30558 4.17921 4.27728 4.28422 4.60325 4.83862 5.04390 5.16107 5.26525 5.40343 5.46539 5.54905 5.81184 6.21905 6.28715 6.40680 6.46522 6.61355 6.77835 6.79124 6.87621 7.02690 7.16702 7.22198 7.38439 7.49450 7.56000 7.67265 8.21571 8.81413 9.41106 10.86086 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.004853 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.899761 B = 5767.694291 C = 6486.120921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.496 4.496 8 C -0.010 4.010 9 C -0.121 4.121 10 C 0.145 3.855 11 H 0.079 0.921 12 N -0.703 5.703 13 C 0.242 3.758 14 C -0.001 4.001 15 N -0.071 5.071 16 O -0.541 6.541 17 C 0.001 3.999 18 C -0.060 4.060 19 C -0.101 4.101 20 Cl -0.040 7.040 21 C -0.113 4.113 22 C 0.014 3.986 23 H 0.267 0.733 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.409 0.591 29 H 0.190 0.810 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -12.000 -9.898 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.515 4.515 8 C -0.048 4.048 9 C -0.160 4.160 10 C 0.043 3.957 11 H 0.097 0.903 12 N -0.326 5.326 13 C 0.127 3.873 14 C -0.154 4.154 15 N 0.254 4.746 16 O -0.598 6.598 17 C -0.147 4.147 18 C -0.080 4.080 19 C -0.141 4.141 20 Cl -0.012 7.012 21 C -0.152 4.152 22 C -0.024 4.024 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.246 0.754 29 H 0.206 0.794 30 H 0.199 0.801 31 H 0.185 0.815 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 7.676 -11.679 -9.519 16.909 hybrid contribution 0.260 0.899 -0.472 1.048 sum 7.936 -10.780 -9.991 16.703 Atomic orbital electron populations 1.69811 1.06174 1.27311 1.49061 1.24830 0.94735 0.98636 0.94200 0.86658 0.79450 0.82904 0.79118 1.19981 1.21743 1.19831 1.19976 0.89172 0.91503 1.50817 1.19614 0.96798 0.94815 0.93595 1.22057 0.97062 0.95010 1.01857 1.21425 0.96021 0.88925 0.89324 0.90324 1.45660 1.20053 1.44962 1.21961 1.17754 0.88297 0.90119 0.91080 1.21978 0.90011 1.04217 0.99210 1.42874 1.08386 1.11266 1.12095 1.97654 1.65776 1.90421 1.05926 1.22176 1.03215 0.99625 0.89661 1.21352 0.92255 0.98047 0.96368 1.20780 0.97890 1.04644 0.90754 1.98385 1.76889 1.95872 1.30024 1.21947 0.91228 0.99104 1.02896 1.19351 0.98946 0.92674 0.91450 0.92341 0.95242 0.95891 0.94380 0.92198 0.75379 0.79350 0.80060 0.81514 0.92342 0.94189 0.91804 0.97341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 12.73 55.43 0.71 -23.53 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.44 26.80 -169.99 -4.56 15.89 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.50 -12.08 5.51 -98.92 -0.55 -12.63 16 8 C -0.01 -0.22 5.60 -27.48 -0.15 -0.37 16 9 C -0.12 -2.18 5.45 -26.63 -0.15 -2.32 16 10 C 0.15 2.34 2.05 -67.98 -0.14 2.20 16 11 H 0.08 1.29 6.52 -51.93 -0.34 0.95 16 12 N -0.70 -9.19 5.21 -52.07 -0.27 -9.46 16 13 C 0.24 3.03 6.66 -83.58 -0.56 2.48 16 14 C 0.00 -0.01 9.54 -17.29 -0.16 -0.17 16 15 N -0.07 -1.13 3.58 -13.05 -0.05 -1.18 16 16 O -0.54 -11.96 20.05 -11.47 -0.23 -12.19 16 17 C 0.00 0.01 10.68 -17.49 -0.19 -0.18 16 18 C -0.06 -0.51 9.93 -39.44 -0.39 -0.90 16 19 C -0.10 -1.04 6.39 -39.00 -0.25 -1.28 16 20 Cl -0.04 -0.37 27.78 -51.86 -1.44 -1.81 16 21 C -0.11 -2.04 5.40 -26.61 -0.14 -2.18 16 22 C 0.01 0.31 5.97 -27.46 -0.16 0.14 16 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.03 0.64 5.17 -51.93 -0.27 0.37 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.63 7.78 -51.93 -0.40 0.23 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.41 4.83 7.41 -40.82 -0.30 4.53 16 29 H 0.19 2.95 6.20 -52.48 -0.33 2.62 16 30 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -31.08 301.39 -8.34 -39.42 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.10 Total: 1.57 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.94 Total: -13.25 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.39 Total: -34.17 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.23 Total: -12.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.56 Total: 15.89 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.44 Total: -1.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.08 -8.34 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.405 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds