Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48500 * 109.47217 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47159 * 119.99577 * 3 2 1 6 6 H 1.48500 * 109.47260 * 239.99819 * 3 2 1 7 7 C 1.38633 * 119.99993 * 179.72025 * 2 1 3 8 8 H 1.07996 * 119.99768 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.35809 * 116.99754 * 174.94019 * 9 7 2 11 11 C 1.39427 * 120.41037 * 5.49385 * 10 9 7 12 12 C 1.38237 * 118.44292 * 180.02562 * 11 10 9 13 13 C 1.39113 * 119.17434 * 359.97438 * 12 11 10 14 14 N 1.39380 * 119.62363 * 179.97438 * 13 12 11 15 15 C 1.37788 * 119.99747 * 185.11676 * 14 13 12 16 16 N 1.30414 * 120.00054 * 354.88808 * 15 14 13 17 17 S 1.76202 * 120.00112 * 174.88532 * 15 14 13 18 18 C 1.80994 * 100.00001 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46854 * 180.02562 * 18 17 15 20 20 N 1.46903 * 109.47236 * 179.97438 * 19 18 17 21 21 N 1.32370 * 120.74839 * 359.97438 * 13 12 11 22 22 C 1.31907 * 121.69720 * 359.75064 * 21 13 12 23 23 H 0.97003 * 119.99863 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.77789 * 359.97438 * 11 10 9 25 25 H 1.08001 * 120.41028 * 179.97438 * 12 11 10 26 26 H 0.96997 * 119.99967 * 5.12492 * 14 13 12 27 27 H 0.97006 * 119.99970 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47156 * 299.99634 * 18 17 15 29 29 H 1.08997 * 109.47401 * 60.00277 * 18 17 15 30 30 H 1.09005 * 109.46963 * 299.99952 * 19 18 17 31 31 H 1.08997 * 109.47171 * 59.99793 * 19 18 17 32 32 H 1.00894 * 111.00190 * 179.97438 * 20 19 18 33 33 H 1.00897 * 110.99903 * 303.95458 * 20 19 18 34 34 H 1.08003 * 119.61880 * 180.26716 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7464 -0.0006 5 1 3.1035 1.6964 1.2126 6 1 3.1036 1.6964 -1.2125 7 6 2.0090 -1.2006 0.0059 8 1 3.0889 -1.2005 0.0063 9 8 1.3349 -2.3680 0.0110 10 6 2.0705 -3.5051 -0.0901 11 6 3.4636 -3.4479 -0.0785 12 6 4.1720 -4.6302 -0.1845 13 6 3.4766 -5.8296 -0.2978 14 7 4.1815 -7.0272 -0.4058 15 6 3.5049 -8.2075 -0.6241 16 7 2.2009 -8.2201 -0.6305 17 16 4.4017 -9.6999 -0.8949 18 6 3.0273 -10.8574 -1.1120 19 6 3.5787 -12.2617 -1.3672 20 7 2.4633 -13.2013 -1.5428 21 7 2.1530 -5.8465 -0.3043 22 6 1.4452 -4.7383 -0.1998 23 1 -0.4850 -0.8401 -0.0004 24 1 3.9771 -2.5019 0.0103 25 1 5.2520 -4.6227 -0.1794 26 1 5.1482 -7.0297 -0.3270 27 1 1.7246 -9.0510 -0.7846 28 1 2.4141 -10.8665 -0.2109 29 1 2.4201 -10.5452 -1.9617 30 1 4.1922 -12.2529 -2.2681 31 1 4.1857 -12.5736 -0.5173 32 1 2.8016 -14.1364 -1.7132 33 1 1.8438 -13.1801 -0.7466 34 1 0.3665 -4.7915 -0.2045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167914607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = 50.783028 kcal Electronic energy + Delta-G solvation = -18587.311806 eV Core-core repulsion = 15455.226146 eV Total energy + Delta-G solvation = -3132.085659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83069 -37.91921 -36.20148 -35.89386 -32.88187 -32.24577 -31.27821 -29.48606 -28.30747 -25.17257 -23.18713 -23.11264 -22.59460 -20.89379 -18.62147 -18.47424 -17.40878 -16.70990 -16.26930 -15.91691 -15.71291 -15.11037 -14.92363 -14.37065 -13.98707 -13.84857 -13.77105 -13.58454 -13.42021 -12.74987 -12.48795 -12.23082 -11.99815 -11.79790 -11.33631 -10.93553 -10.60625 -10.33209 -9.82146 -9.49024 -9.29849 -9.15900 -9.03829 -8.64555 -8.26189 -8.14076 -6.99973 -6.81899 -4.09540 0.90275 1.81521 1.88864 2.10399 2.67904 3.21144 3.26440 3.38937 3.42760 4.07954 4.09330 4.28355 4.43584 4.63246 4.90344 5.00846 5.12702 5.18955 5.23610 5.32355 5.36207 5.58931 5.82627 5.89892 6.40413 6.48893 6.54563 6.84221 6.95784 6.98546 7.18307 7.41051 7.65628 8.27874 8.33446 8.83408 8.91126 9.53221 10.62138 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.055697 B = 0.002838 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.601744 B = 9863.598247 C =10317.464658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.011 3.989 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.082 0.918 9 O -0.195 6.195 10 C 0.086 3.914 11 C -0.169 4.169 12 C -0.151 4.151 13 C 0.264 3.736 14 N -0.622 5.622 15 C 0.415 3.585 16 N -0.673 5.673 17 S -0.189 6.189 18 C -0.098 4.098 19 C 0.082 3.918 20 N -0.847 5.847 21 N -0.413 5.413 22 C 0.051 3.949 23 H 0.283 0.717 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.419 0.581 27 H 0.333 0.667 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.349 0.651 33 H 0.344 0.656 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -19.819 -1.053 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.195 4.195 3 Si 0.920 3.080 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.100 0.900 9 O -0.098 6.098 10 C 0.030 3.970 11 C -0.195 4.195 12 C -0.175 4.175 13 C 0.033 3.967 14 N -0.258 5.258 15 C 0.021 3.979 16 N -0.310 5.310 17 S 0.035 5.965 18 C -0.248 4.248 19 C -0.050 4.050 20 N -0.379 5.379 21 N -0.126 5.126 22 C -0.111 4.111 23 H 0.094 0.906 24 H 0.158 0.842 25 H 0.138 0.862 26 H 0.257 0.743 27 H 0.154 0.846 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.184 -17.903 -1.655 20.190 hybrid contribution 0.667 -2.027 0.841 2.293 sum 9.852 -19.930 -0.814 22.247 Atomic orbital electron populations 1.70579 1.06551 1.31797 1.41942 1.26552 0.96843 1.01131 0.94986 0.83108 0.74512 0.73346 0.77083 1.19728 1.20707 1.20720 1.22178 0.93006 0.82237 1.57427 0.90011 1.83687 1.34956 1.11865 1.79257 1.20323 0.90925 0.89004 0.96721 1.21339 0.93818 0.98399 1.05980 1.21058 0.99590 0.91129 1.05731 1.17835 0.89198 0.83859 1.05850 1.41397 1.08143 1.01576 1.74662 1.23851 0.90933 0.88219 0.94881 1.69547 1.02918 1.31690 1.26803 1.85936 1.16099 1.03972 1.90535 1.23577 0.98381 0.96742 1.06076 1.21367 0.92800 0.89276 1.01594 1.58633 1.19920 1.11588 1.47752 1.67414 1.05079 1.28463 1.11638 1.21717 0.99558 0.84767 1.05075 0.90642 0.84183 0.86197 0.74342 0.84638 0.89209 0.88107 0.89663 0.94141 0.83753 0.84360 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.70 55.48 0.76 -25.10 16 2 C 0.01 0.30 5.49 -17.51 -0.10 0.20 16 3 Si 1.10 23.21 29.92 -169.99 -5.09 18.12 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.98 9.50 30.88 0.29 -12.69 16 8 H 0.08 2.09 5.25 -52.49 -0.28 1.81 16 9 O -0.19 -5.38 9.17 -0.07 0.00 -5.38 16 10 C 0.09 2.07 6.67 -38.97 -0.26 1.81 16 11 C -0.17 -3.57 9.26 -39.14 -0.36 -3.93 16 12 C -0.15 -2.71 9.93 -39.26 -0.39 -3.10 16 13 C 0.26 4.95 7.44 -154.68 -1.15 3.80 16 14 N -0.62 -9.36 5.51 -11.97 -0.07 -9.42 16 15 C 0.41 6.10 8.12 -87.88 -0.71 5.38 16 16 N -0.67 -11.13 11.37 30.78 0.35 -10.78 16 17 S -0.19 -2.01 22.23 -107.50 -2.39 -4.40 16 18 C -0.10 -0.85 4.57 37.16 0.17 -0.68 16 19 C 0.08 0.55 6.79 -3.82 -0.03 0.52 16 20 N -0.85 -5.02 9.62 -10.36 -0.10 -5.12 16 21 N -0.41 -8.73 7.70 -12.20 -0.09 -8.83 16 22 C 0.05 1.13 11.14 -17.35 -0.19 0.93 16 23 H 0.28 8.54 7.97 -40.82 -0.33 8.21 16 24 H 0.14 2.90 5.76 -52.49 -0.30 2.60 16 25 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.42 4.86 8.75 -40.82 -0.36 4.50 16 27 H 0.33 4.67 6.02 -40.82 -0.25 4.42 16 28 H 0.09 0.75 7.67 -51.92 -0.40 0.36 16 29 H 0.10 0.96 7.67 -51.92 -0.40 0.56 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.35 1.43 9.08 -39.29 -0.36 1.08 16 33 H 0.34 1.70 8.99 -39.29 -0.35 1.34 16 34 H 0.15 3.17 8.06 -52.48 -0.42 2.74 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -32.67 309.01 -8.20 -40.86 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -3.50 Total: 13.14 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.73 Total: -7.75 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.85 Total: -59.25 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: 0.00 Total: -5.38 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.09 Total: 18.12 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.39 Total: -4.40 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.67 -8.20 -40.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167914607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.648 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds