Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48500 * 109.47217 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47159 * 119.99577 * 3 2 1 6 6 H 1.48500 * 109.47260 * 239.99819 * 3 2 1 7 7 C 1.38633 * 119.99993 * 179.72025 * 2 1 3 8 8 H 1.07996 * 119.99768 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.35809 * 116.99754 * 174.94019 * 9 7 2 11 11 C 1.39427 * 120.41037 * 5.49385 * 10 9 7 12 12 C 1.38237 * 118.44292 * 180.02562 * 11 10 9 13 13 C 1.39113 * 119.17434 * 359.97438 * 12 11 10 14 14 N 1.39380 * 119.62363 * 179.97438 * 13 12 11 15 15 C 1.37788 * 119.99747 * 185.11676 * 14 13 12 16 16 N 1.30414 * 120.00054 * 354.88808 * 15 14 13 17 17 S 1.76202 * 120.00112 * 174.88532 * 15 14 13 18 18 C 1.80994 * 100.00001 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46854 * 180.02562 * 18 17 15 20 20 N 1.46903 * 109.47236 * 179.97438 * 19 18 17 21 21 N 1.32370 * 120.74839 * 359.97438 * 13 12 11 22 22 C 1.31907 * 121.69720 * 359.75064 * 21 13 12 23 23 H 0.97003 * 119.99863 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.77789 * 359.97438 * 11 10 9 25 25 H 1.08001 * 120.41028 * 179.97438 * 12 11 10 26 26 H 0.96997 * 119.99967 * 5.12492 * 14 13 12 27 27 H 0.97006 * 119.99970 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47156 * 299.99634 * 18 17 15 29 29 H 1.08997 * 109.47401 * 60.00277 * 18 17 15 30 30 H 1.09005 * 109.46963 * 299.99952 * 19 18 17 31 31 H 1.08997 * 109.47171 * 59.99793 * 19 18 17 32 32 H 1.00894 * 111.00190 * 179.97438 * 20 19 18 33 33 H 1.00897 * 110.99903 * 303.95458 * 20 19 18 34 34 H 1.08003 * 119.61880 * 180.26716 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7464 -0.0006 5 1 3.1035 1.6964 1.2126 6 1 3.1036 1.6964 -1.2125 7 6 2.0090 -1.2006 0.0059 8 1 3.0889 -1.2005 0.0063 9 8 1.3349 -2.3680 0.0110 10 6 2.0705 -3.5051 -0.0901 11 6 3.4636 -3.4479 -0.0785 12 6 4.1720 -4.6302 -0.1845 13 6 3.4766 -5.8296 -0.2978 14 7 4.1815 -7.0272 -0.4058 15 6 3.5049 -8.2075 -0.6241 16 7 2.2009 -8.2201 -0.6305 17 16 4.4017 -9.6999 -0.8949 18 6 3.0273 -10.8574 -1.1120 19 6 3.5787 -12.2617 -1.3672 20 7 2.4633 -13.2013 -1.5428 21 7 2.1530 -5.8465 -0.3043 22 6 1.4452 -4.7383 -0.1998 23 1 -0.4850 -0.8401 -0.0004 24 1 3.9771 -2.5019 0.0103 25 1 5.2520 -4.6227 -0.1794 26 1 5.1482 -7.0297 -0.3270 27 1 1.7246 -9.0510 -0.7846 28 1 2.4141 -10.8665 -0.2109 29 1 2.4201 -10.5452 -1.9617 30 1 4.1922 -12.2529 -2.2681 31 1 4.1857 -12.5736 -0.5173 32 1 2.8016 -14.1364 -1.7132 33 1 1.8438 -13.1801 -0.7466 34 1 0.3665 -4.7915 -0.2045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167914607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = 26.590437 kcal Electronic energy + Delta-G solvation = -18588.360875 eV Core-core repulsion = 15455.226146 eV Total energy + Delta-G solvation = -3133.134729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48767 -39.59420 -37.64390 -36.49735 -34.44119 -33.96783 -32.89713 -30.30672 -29.78054 -27.07870 -24.82756 -24.36197 -23.52919 -22.36551 -20.32397 -19.86804 -18.90288 -18.01781 -17.49212 -16.89836 -16.71955 -16.39144 -16.06347 -15.68617 -15.61371 -15.50653 -15.22727 -15.08814 -14.41888 -14.23625 -13.78310 -13.52221 -13.22333 -12.69957 -12.53400 -12.47149 -12.17916 -11.92755 -11.70899 -11.00534 -10.72585 -10.59367 -10.38227 -9.75942 -9.64264 -9.06659 -8.92435 -8.63676 -6.20901 -0.06766 0.24050 0.47838 0.99223 1.37009 1.52094 1.65171 1.81324 2.15724 2.38856 2.89770 3.14863 3.28656 3.55669 3.67246 3.67493 3.86176 3.96929 4.02128 4.22914 4.27773 4.41761 4.60505 4.75339 4.82974 4.88500 5.24490 5.40544 5.46219 5.95965 6.06752 6.13212 6.25493 6.48695 6.86250 7.05182 7.38362 7.62096 8.52634 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.055697 B = 0.002838 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.601744 B = 9863.598247 C =10317.464658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.045 4.045 3 Si 1.145 2.855 4 H -0.278 1.278 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.486 4.486 8 H 0.097 0.903 9 O -0.243 6.243 10 C 0.052 3.948 11 C -0.164 4.164 12 C -0.139 4.139 13 C 0.281 3.719 14 N -0.614 5.614 15 C 0.398 3.602 16 N -0.713 5.713 17 S -0.137 6.137 18 C -0.101 4.101 19 C 0.087 3.913 20 N -0.855 5.855 21 N -0.429 5.429 22 C 0.042 3.958 23 H 0.261 0.739 24 H 0.145 0.855 25 H 0.172 0.828 26 H 0.438 0.562 27 H 0.343 0.657 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.360 0.640 33 H 0.349 0.651 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.473 -21.907 -1.242 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.241 4.241 3 Si 0.961 3.039 4 H -0.203 1.203 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.562 4.562 8 H 0.114 0.886 9 O -0.149 6.149 10 C -0.002 4.002 11 C -0.191 4.191 12 C -0.162 4.162 13 C 0.047 3.953 14 N -0.252 5.252 15 C 0.006 3.994 16 N -0.351 5.351 17 S 0.087 5.913 18 C -0.251 4.251 19 C -0.045 4.045 20 N -0.389 5.389 21 N -0.143 5.143 22 C -0.117 4.117 23 H 0.069 0.931 24 H 0.163 0.837 25 H 0.190 0.810 26 H 0.279 0.721 27 H 0.164 0.836 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.737 -20.095 -1.847 23.863 hybrid contribution -0.230 -1.928 0.851 2.120 sum 12.507 -22.023 -0.997 25.347 Atomic orbital electron populations 1.70715 1.07871 1.30196 1.46418 1.28394 0.96881 1.04966 0.93895 0.82581 0.73745 0.68736 0.78850 1.20254 1.18238 1.18349 1.22603 0.93831 0.82736 1.57061 0.88600 1.83677 1.36223 1.12719 1.82269 1.20716 0.92425 0.88510 0.98519 1.21563 0.92769 1.00011 1.04763 1.21465 1.01991 0.89332 1.03436 1.18329 0.88767 0.85812 1.02381 1.41429 1.08934 1.00655 1.74231 1.24118 0.91548 0.89633 0.94120 1.69551 1.04675 1.33495 1.27339 1.85809 1.15041 1.00712 1.89696 1.23718 0.97983 0.97434 1.05982 1.21298 0.93031 0.88173 1.02002 1.58609 1.19841 1.12227 1.48200 1.67548 1.06492 1.27623 1.12628 1.21749 0.99841 0.84896 1.05225 0.93060 0.83711 0.81025 0.72095 0.83603 0.88821 0.88946 0.89634 0.93140 0.82474 0.83725 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.70 21.61 0.30 -56.72 16 2 C -0.04 -2.54 5.49 84.82 0.47 -2.07 16 3 Si 1.15 46.86 29.92 68.60 2.05 48.91 16 4 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.49 -27.57 9.50 67.91 0.64 -26.92 16 8 H 0.10 4.92 5.25 -2.91 -0.02 4.90 16 9 O -0.24 -14.13 9.17 -23.17 -0.21 -14.35 16 10 C 0.05 2.53 6.67 22.67 0.15 2.68 16 11 C -0.16 -6.77 9.26 22.56 0.21 -6.56 16 12 C -0.14 -4.53 9.93 22.48 0.22 -4.31 16 13 C 0.28 9.90 7.44 132.94 0.99 10.89 16 14 N -0.61 -16.46 5.51 -191.79 -1.06 -17.52 16 15 C 0.40 10.71 8.12 179.39 1.46 12.16 16 16 N -0.71 -22.66 11.37 -56.53 -0.64 -23.30 16 17 S -0.14 -2.46 22.23 -56.49 -1.26 -3.72 16 18 C -0.10 -1.50 4.57 71.98 0.33 -1.17 16 19 C 0.09 0.93 6.79 86.30 0.59 1.52 16 20 N -0.86 -8.13 9.62 -186.70 -1.80 -9.93 16 21 N -0.43 -17.95 7.70 -192.51 -1.48 -19.43 16 22 C 0.04 1.94 11.14 84.79 0.94 2.88 16 23 H 0.26 16.94 7.97 -92.71 -0.74 16.20 16 24 H 0.15 5.80 5.76 -2.91 -0.02 5.78 16 25 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.44 8.19 8.75 -92.71 -0.81 7.38 16 27 H 0.34 9.25 6.02 -92.70 -0.56 8.69 16 28 H 0.09 1.36 7.67 -2.40 -0.02 1.34 16 29 H 0.09 1.59 7.67 -2.40 -0.02 1.57 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.36 2.09 9.08 -89.70 -0.81 1.28 16 33 H 0.35 2.70 8.99 -89.70 -0.81 1.89 16 34 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -74.68 309.01 0.14 -74.54 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -1.76 Total: 32.41 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 6.00 Total: -10.90 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -4.68 Total: -126.90 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.21 Total: -14.35 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.05 Total: 48.91 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -1.26 Total: -3.72 kcal Total: -74.68 0.14 -74.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167914607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.133 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds