Wall clock time and date at job start Tue Mar 31 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47347 * 240.00204 * 3 2 1 5 5 H 1.48499 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47049 * 120.00158 * 3 2 1 7 7 C 1.38807 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99577 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99631 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46941 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47120 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47056 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99894 * 180.02562 * 13 12 11 15 15 O 1.21558 * 119.99947 * 0.02562 * 14 13 12 16 16 C 1.47785 * 119.99949 * 180.02562 * 14 13 12 17 17 C 1.39616 * 120.12898 * 0.26837 * 16 14 13 18 18 C 1.37895 * 119.86407 * 180.21481 * 17 16 14 19 19 C 1.38514 * 120.12871 * 359.51478 * 18 17 16 20 20 Cl 1.73606 * 119.86591 * 180.27825 * 19 18 17 21 21 C 1.38506 * 120.26659 * 0.25919 * 19 18 17 22 22 C 1.37896 * 120.13471 * 359.97438 * 21 19 18 23 23 H 0.97006 * 119.99700 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00403 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.46915 * 60.00136 * 10 9 7 26 26 H 1.09003 * 109.47260 * 300.00290 * 10 9 7 27 27 H 1.09002 * 109.46928 * 60.00483 * 11 10 9 28 28 H 1.09003 * 109.47657 * 300.00386 * 11 10 9 29 29 H 1.09002 * 109.46674 * 60.00513 * 12 11 10 30 30 H 1.08997 * 109.47063 * 300.00414 * 12 11 10 31 31 H 0.96996 * 120.00073 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.06753 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.93741 * 179.79878 * 18 17 16 34 34 H 1.08007 * 119.93552 * 180.02562 * 21 19 18 35 35 H 1.08004 * 120.06955 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 6 1.8287 -6.1447 -0.0026 13 7 0.8766 -7.2582 -0.0024 14 6 1.3258 -8.5289 -0.0033 15 8 2.5210 -8.7511 -0.0038 16 6 0.3655 -9.6522 -0.0036 17 6 -1.0077 -9.4001 -0.0086 18 6 -1.8990 -10.4523 -0.0044 19 6 -1.4343 -11.7571 -0.0054 20 17 -2.5625 -13.0767 -0.0074 21 6 -0.0731 -12.0134 -0.0052 22 6 0.8279 -10.9695 -0.0045 23 1 -0.4850 0.8401 -0.0004 24 1 0.3554 -2.3880 -0.0005 25 1 2.6853 -3.7149 0.8878 26 1 2.6840 -3.7141 -0.8922 27 1 0.4361 -4.7617 -0.8901 28 1 0.4380 -4.7621 0.8899 29 1 2.4566 -6.2029 0.8865 30 1 2.4540 -6.2020 -0.8935 31 1 -0.0770 -7.0809 -0.0016 32 1 -1.3712 -8.3831 -0.0127 33 1 -2.9615 -10.2586 -0.0050 34 1 0.2834 -13.0329 -0.0063 35 1 1.8890 -11.1705 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171814074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:35 Heat of formation + Delta-G solvation = -15.630687 kcal Electronic energy + Delta-G solvation = -18161.010722 eV Core-core repulsion = 14991.708690 eV Total energy + Delta-G solvation = -3169.302032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49380 -38.77381 -36.87928 -36.10077 -34.46883 -32.35273 -31.51261 -31.25922 -29.41686 -25.64431 -23.96388 -23.25004 -22.39044 -21.28225 -20.48999 -18.46611 -17.12220 -16.80420 -16.40964 -15.75764 -15.35142 -15.22988 -14.57511 -14.55856 -14.16713 -13.84270 -13.78717 -13.29495 -13.03222 -12.63648 -12.53780 -12.05001 -11.86356 -11.68173 -11.30068 -10.99974 -10.93915 -10.82554 -10.64857 -10.21377 -10.04473 -9.72376 -9.59797 -9.33041 -9.07176 -8.89504 -6.95906 -5.79090 -3.08208 0.24777 0.78355 1.60218 2.48548 2.96922 3.39613 3.43590 3.47682 3.48884 4.22345 4.33571 4.42424 4.57234 4.73406 4.84755 5.01787 5.11753 5.25718 5.42215 5.55355 5.57181 5.60524 5.67692 5.80324 5.92948 6.01135 6.14813 6.17603 6.28326 6.34933 6.75228 6.79542 7.32419 7.67955 8.00981 8.39911 9.50964 10.07660 10.42294 11.43828 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041691 B = 0.002255 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.449841 B =12414.018657 C =13059.719430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.720 5.720 14 C 0.554 3.446 15 O -0.535 6.535 16 C -0.127 4.127 17 C -0.074 4.074 18 C -0.117 4.117 19 C -0.014 4.014 20 Cl -0.065 7.065 21 C -0.119 4.119 22 C -0.048 4.048 23 H 0.256 0.744 24 H 0.384 0.616 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -26.359 -0.019 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.341 3.659 15 O -0.413 6.413 16 C -0.130 4.130 17 C -0.093 4.093 18 C -0.136 4.136 19 C -0.041 4.041 20 Cl -0.036 7.036 21 C -0.137 4.137 22 C -0.067 4.067 23 H 0.066 0.934 24 H 0.217 0.783 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.291 -26.467 -0.019 26.813 hybrid contribution -0.534 0.938 -0.001 1.079 sum -4.825 -25.529 -0.019 25.981 Atomic orbital electron populations 1.69650 1.05140 1.25828 1.57729 1.24758 0.95573 0.97787 1.02943 0.86231 0.78502 0.83342 0.77905 1.21210 1.21664 1.21214 1.19200 0.91085 0.84111 1.42827 0.91122 1.42330 1.05854 0.99973 1.89655 1.20519 0.93244 0.85150 0.98273 1.21958 0.99641 0.93274 1.02790 1.21425 0.91650 0.84330 1.02762 1.46008 1.10930 1.05644 1.74583 1.18162 0.88064 0.82823 0.76850 1.90792 1.16082 1.84768 1.49702 1.20150 0.93535 0.94355 1.04981 1.21343 0.91782 0.99575 0.96553 1.21031 1.01022 0.90287 1.01222 1.21218 0.90913 0.89319 1.02691 1.98394 1.61223 1.47342 1.96658 1.21077 0.90723 1.00520 1.01419 1.21277 1.00904 0.90377 0.94172 0.93438 0.78299 0.96002 0.96002 0.91225 0.91213 0.91038 0.91046 0.76439 0.84372 0.84109 0.84153 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.48 5.60 -59.91 -0.34 -18.82 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 12 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 13 N -0.72 -7.98 5.51 -61.27 -0.34 -8.32 16 14 C 0.55 6.86 7.77 -12.36 -0.10 6.76 16 15 O -0.54 -8.53 16.35 5.32 0.09 -8.44 16 16 C -0.13 -1.23 5.87 -104.97 -0.62 -1.85 16 17 C -0.07 -0.55 9.54 -39.19 -0.37 -0.93 16 18 C -0.12 -0.83 9.81 -39.61 -0.39 -1.22 16 19 C -0.01 -0.11 6.33 -39.38 -0.25 -0.36 16 20 Cl -0.07 -0.47 28.95 -51.86 -1.50 -1.97 16 21 C -0.12 -0.89 9.81 -39.61 -0.39 -1.28 16 22 C -0.05 -0.43 9.59 -39.19 -0.38 -0.81 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.38 10.02 7.67 -40.82 -0.31 9.70 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 3.37 6.50 -40.82 -0.27 3.11 16 32 H 0.14 0.74 6.40 -52.49 -0.34 0.41 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.15 1.28 7.65 -52.48 -0.40 0.88 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -32.86 321.26 -8.72 -41.58 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.24 Total: 5.89 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.93 Total: -4.70 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.05 Total: -54.56 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.86 -8.72 -41.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171814074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.949 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds